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RNASEQR | A streamlined RNA-seq sequence analysis program

Analyzes raw data from RNA-seq experiments effectively and outputs results in a manner that is compatible with a wide variety of specialized downstream analyses on desktop computers. RNASEQR yields more accurate estimates for gene expression, complete gene structures and new transcript isoforms, as well as more accurate detection of single nucleotide variants (SNVs).

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RNASEQR forum

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RNASEQR classification

RNASEQR specifications

Unique identifier:
OMICS_01263
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Python
Stability:
Stable

RNASEQR distribution

versioning

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No versioning.

RNASEQR support

Maintainer

  • Leslie Y. Chen <>

Credits

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Publications

Institution(s)

Institute for Systems Biology, Seattle, WA, USA; Department of Neurosurgery, Chang Gung University College of Medicine and Memorial Hospital, Kwei-Shan, Taoyuan County, Taiwan, China; Department of Computer Science, National Tsing-Hua University, Hsinchu, Taiwan, China; Department of Computer Science and Information Engineering, Providence University, Taichung, Taiwan, China; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg

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