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RNASeqReadSimulator

Generates simulated single-end or paired-end RNA-Seq reads. RNASeqReadSimulator is a set of scripts that provides users an application to allow experienced users to expand functions. It allows users to randomly assign expression levels of transcripts and generate simulated single-end or paired-end RNA-Seq reads. It is also able to simulate random read errors from sequencing platforms. All scripts are command line driven and allows users to invoke and design more functions.

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RNASeqReadSimulator classification

RNASeqReadSimulator specifications

Unique identifier:
OMICS_01964
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
Biopython
Software type:
Application/Script, Package/Module
Restrictions to use:
None
Programming languages:
Python, Shell (Bash)
Stability:
Stable
Maintained:
Yes

RNASeqReadSimulator distribution

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RNASeqReadSimulator support

Documentation

Maintainer

  • Wei Li <>

Additional information

http://alumni.cs.ucr.edu/~liw/rnaseqreadsimulator.html

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