RNASeqReadSimulator pipeline

RNASeqReadSimulator specifications

Information


Unique identifier OMICS_01964
Name RNASeqReadSimulator
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, Shell (Bash)
Computer skills Advanced
Stability Stable
Requirements Biopython
Maintained Yes

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Documentation


Maintainer


  • person_outline Wei Li <>

Additional information


http://alumni.cs.ucr.edu/~liw/rnaseqreadsimulator.html

RNASeqReadSimulator IN pipelines

 (2)
2017
PMCID: 5952954
PMID: 28069635
DOI: 10.1093/bib/bbw137

[…] of uniform expression levels was chosen to optimize the number of observed splice variants being sampled to the test data., for simulating illumina-like error profile for the short reads, we used rnaseqreadsimulator. as rnaseqreadsimulator only simulates substitutions, for simulating pacbio-like error profile for the long reads, we used an in-house script. the insertions and deletions […]

2017
PMCID: 5952954
PMID: 28069635
DOI: 10.1093/bib/bbw137

[…] levels was chosen to optimize the number of observed splice variants being sampled to the test data., for simulating illumina-like error profile for the short reads, we used rnaseqreadsimulator. as rnaseqreadsimulator only simulates substitutions, for simulating pacbio-like error profile for the long reads, we used an in-house script. the insertions and deletions simulated by the script […]

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