RNAshapes protocols

RNAshapes specifications

Information


Unique identifier OMICS_03466
Name RNAshapes
Alternative name RNA shapes studio
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_03466
Name RNAshapes
Alternative name RNA shapes studio
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publications for RNAshapes

library_books

The RNA shapes studio.

2015 Bioinformatics
PMCID: 4308662
PMID: 25273103
DOI: 10.1093/bioinformatics/btu649

RNAshapes IN pipeline

2010
PMCID: 2828121
PMID: 20080511
DOI: 10.1093/bioinformatics/btq014

[…] structural data via machine learning techniques. to benefit from our aproach, these methods need to be augmented to support shape abstraction. technically, they are based on different grammars than rnashapes. for these grammars, shape abstraction functions need to be defined and implemented. then, our tdm generator and the strategies described here should carry over without change., the authors […]

RNAshapes institution(s)
Practical Computer Science, Faculty of Technology, Bielefeld University, Bielefeld, Germany; Practical Computer Science, Faculty of Technology, Bielefeld University, Bielefeld, Germany

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