RNAsnp Web Server protocols

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RNAsnp Web Server specifications

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Unique identifier OMICS_00392
Name RNAsnp Web Server
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for RNAsnp Web Server

RNAsnp Web Server in pipeline

2014
PMCID: 4219694
PMID: 25369454
DOI: 10.1371/journal.pone.0110692

[…] script which allows large-scale analysis . rnssnp mode 1 was used with default parameters, except minimum length of the sequence interval was set to 25. parameter descriptions can be found from the rnasnp web server (http://rth.dk/resources/rnasnp/)., all statistical calculations and figures were produced using r and its packages., we analyzed single nucleotide variations (snvs) within 2884 uce […]


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RNAsnp Web Server in publications

 (2)
PMCID: 5719027
PMID: 29213066
DOI: 10.1038/s41598-017-17387-x

[…] to structural change and function often relies on secondary structure. we used bioinformatics to computationally model the effect of the mutations made on the as-il1α higher-order structure. the rnasnp web server predicts the effect of single nucleotide polymorphisms (snps) on local secondary structure based on the rna folding algorithms used in the viennarna package,. computational […]

PMCID: 5743846
PMID: 29129848
DOI: 10.2183/pjab.93.042

[…] through a combination of thermodynamics, sequence comparison, and experiments, method for secondary structure prediction have improved. among several prediction tools for secondary structure, rnasnp web server can predict the effect of variants on mrna folding.) splicing isoforms that are influenced by variants also can be compared using mfold.), a quantitative trait locus (qtl) […]


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RNAsnp Web Server institution(s)
Center for non-coding RNA in Technology and Health, University of Copenhagen, Grønnegårdsvej, Denmark

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