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RNAspace.org specifications

Information


Unique identifier OMICS_16559
Name RNAspace.org
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Christine Gaspin <>

Information


Unique identifier OMICS_16559
Name RNAspace.org
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.2
Stability Stable
Requirements
Cherrypy, Cheetah, blastall, bl2seq, clustalw, Vienna RNA, UNAFold, RNAshapes, RNAz
Maintained Yes

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Maintainer


  • person_outline Christine Gaspin <>

Publication for RNAspace.org

RNAspace.org in publications

 (2)
PMCID: 5746004
PMID: 29281966
DOI: 10.1186/s12864-017-4387-x

[…] for data visualization and circular representation of results (http://circos.ca/)., prediction of srnas and rna-based regulatory elements was performed using the rnaspace web server (http://www.rnaspace.org/) and the rfam database (http://rfam.xfam.org/) and the entire nucleotide sequence of b. breve ucc2003 as input., artemis v16 (http://www.sanger.ac.uk/science/tools/artemis) was used […]

PMCID: 5203880
PMID: 28078297
DOI: 10.1155/2016/6106029

[…] rnas (srnas) are ubiquitous regulators existing in all living organisms. they can impact various biological processes via interacting with mrna targets or binding to regulatory proteins [, ]. rnaspace.org (http://rnaspace.org/), which is a comprehensive prediction and annotation tool of ncrna [], was used to predict ncrna of h. pylori. then, the particular ones contained by unique regions […]


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RNAspace.org institution(s)
INRA, UBIA, Castanet-Tolosan, France; LIFL, UMR CNRS Université Lille 1, Villeneuve d’Ascq, France; INRIA Lille Nord Europe, Villeneuve d’Ascq, France; INRA, Plateforme Bioinformatique, Castanet-Tolosan, France; INRA, SIGENAE, Castanet, France; IGM, CNRS-U Paris Sud, Orsay, France
RNAspace.org funding source(s)
This work was supported by the French ‘‘Groupement d’Interet Scientifique Infrastructure, Biologie, Sante Agronomie.’’

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