RnBeads specifications

Information


Unique identifier OMICS_00800
Name RnBeads
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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RnBeads article

RnBeads citations

 (2)
2017
PMCID: 5559542

[…] family included in the same experiment. for each experiment, quality control and data pre-processing were performed separately, while the same analytic tools and methods were applied. the r package rnbeads 30 was applied to extract methylation values. in the quality control, a series of probe and sample filtering steps were followed: probes mapping to sex chromosomes, associated with snps […]

2015
PMCID: 4668652

[…] β = (max(cy5, 0))/(|cy3| + |cy5| + 100). beta (β) = 1 indicates complete methylation; β = 0 represents no methylation. outliers were assessed using quality control plots generated through the rnbeads pipeline designed to diagnose problems such as poor bisulfite conversion or signal intensity issues. functional normalization was performed using minfi.funnorm [47] following background […]

RnBeads institution(s)
Max Planck Institute for Informatics, Saarbrücken, Germany; Department of Genetics/Epigenetics, Saarland University, Saarbrücken, Germany; CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria

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