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An R package for comprehensive analysis of DNA methylation data obtained with any experimental protocol that provides single-CpG resolution, including Infinium 450K microarray and bisulfite sequencing protocols, but also MeDIP-seq and MBD-seq.

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RnBeads classification

RnBeads specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
R
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced

Publications

  • (Assenov et al., 2014) Comprehensive analysis of DNA methylation data with RnBeads. Nature methods.
    Published on: 2014 Nov 01
    PMID: 25262207

Link to literature

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