Roary specifications

Unique identifier:
OMICS_09491
Interface:
Command line interface
Input data:
Annotated assemblies
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Input format:
GFF3
Programming languages:
Perl
Computer skills:
Advanced
Maintained:
Yes
  • Archaebacteria
  • Eubacteria

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

Roary distribution

download

Roary support

Maintainer

  • Andrew J. Page <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Pathogen Genomics, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Department of Medicine, University of Cambridge, Cambridge, UK; School of Medicine, North Haugh, St Andrews, UK; College of Medicine, Swansea University, Swansea, UK

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

2 user reviews

star_border star_border star_border star_border star_border
star star star star star

2 user reviews

star_border star_border star_border star_border star_border
star star star star star
Meiski's avatar image Meiski's country flag

Meiski

star_border star_border star_border star_border star_border
star star star star star

For those who are used to work in terminal, Roary should not be difficult to use or to install. It has a bunch of software dependencies to run properly and is well documented. Roary can be configured to use specific databases and organisms allowing to change parameters of analysis, enriching your results. Do not require too much computational capability, turning out to be a very powerful tool!!

Korin Albert's avatar image Korin Albert's country flag

Korin Albert

star_border star_border star_border star_border star_border
star star star star star

I have been Roary to analyze small pangenomes (~20 isolates, ~2.5Mb each) on my laptop. For my small sample set, it runs really fast and works well. Also check the Roary website to see post-analysis programs they recommend; based on the website's suggestion, I visualize Roary output using FriPan.

Related Tools