Robetta pipeline

Robetta specifications

Information


Unique identifier OMICS_03868
Name Robetta
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Stability Beta
Maintained Yes

Maintainer


  • person_outline David Baker <>

Publication for Robetta

Robetta IN pipelines

 (3)
2017
PMCID: 5405553
PMID: 28446174
DOI: 10.1186/s12918-017-0427-z

[…] the nucleotide of interest was at a position for easy read during sanger sequencing. amplification and sequencing was performed by eurofins genomics india pvt. ltd., ab-initio models were made using robetta server [27] (http://robetta.bakerlab.org) except for rpsl (homology modeling was used) and the models generated were checked for various parameters for model assessment, such as ramachandran […]

2015
PMCID: 4592972
PMID: 26435059
DOI: 10.1038/srep14731

[…] or cited (table 2)., additionally, to better understand how the pathogenic nssnps affect protein conformation and result in disease states, we constructed wild type and mutant proteins via the robetta and swiss-model tools (fig. 1, supplementary file 1–4). and the geometric evaluations of the modeled 3d structure were performed using procheck by calculating the ramachandran plot (fig. 2). […]

2009
PMCID: 2847169
PMID: 19437048
DOI: 10.1007/s00894-009-0516-z

[…] md trajectories for the essential dynamics analysis was excluded in both cases., mutations destabilising gαi1/rgs14 protein interactions were identified by computational alanine scanning using the robetta server [70, 71]. this procedure allows for a quick (albeit very approximate) estimate of the changes in non-covalent interaction free energies between two proteins upon mutation of residues […]

Robetta institution(s)
Structural Genomics of Pathogenic Protozoa, Department of Biochemistry, University of Washington, Seattle WA, USA
Robetta funding source(s)
Supported by NIH grant No. P50 GM64655 and the Howard Hughes Medical Institute.

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