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Robetta specifications

Information


Unique identifier OMICS_03868
Name Robetta
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Stability Beta
Maintained Yes

Maintainer


  • person_outline David Baker

Publication for Robetta

Robetta citations

 (257)
library_books

Critical amino acids for the insecticidal activity of Vip3Af from Bacillus thuringiensis: Inference on structural aspects

2018
Sci Rep
PMCID: 5953952
PMID: 29765057
DOI: 10.1038/s41598-018-25346-3

[…] The ab initio modelling of the full sequence of the Vip3Af1(WT) protein was done using the fully automated server Robetta available online using guinzo domain prediction (http://robetta.bakerlab.org). The prediction of disulfide bonds were done using Disulfind online server (http://disulfind.dsi.unifi.it) and the […]

call_split

CHAT gene polymorphism rs3810950 is associated with the risk of Alzheimer’s disease in the Czech population

2018
J Biomed Sci
PMCID: 5950140
PMID: 29759072
DOI: 10.1186/s12929-018-0444-2
call_split See protocol

[…] The N-terminal domains (1st-126th residue) of the M isoform of ChAT non-mutant protein and mutant A120T of the same isoform were prepared using ab initio modelling Robetta server (http://robetta.bakerlab.org/) and homology modelling software MODELLER []. Search for hydrogen bond network was done via VMD [], Schrodinger Maestro software (Schrodinger, L. Biologics […]

library_books

Functional domains of the FSHD associated DUX4 protein

2018
PMCID: 5936065
PMID: 29618456
DOI: 10.1242/bio.033977

[…] that we consulted include RaptorX at http://raptorx.uchicago.edu/StructurePrediction/ () (A); MetaDisorder at http://genesilico.pl/metadisorder/ (); Phyre2 at http://www.sbg.bio.ic.ac.uk/~phyre2 (); Robetta at http://robetta.bakerlab.org (); and the Eukaryotic Linear Motif Resource at http://elm.eu.org (). Each of these sites similarly predicted that regions with well-defined tertiary structure i […]

library_books

Realm of Thermoalkaline Lipases in Bioprocess Commodities

2018
PMCID: 5832097
PMID: 29666707
DOI: 10.1155/2018/5659683

[…] as found in this lipase molecule []. Recently, amino acid sequence of lipase from S. arlettae JPBW-1 was characterized using MALDI-TOF-MS analysis and comparative modelling approach was performed via ROBETTA server to postulate a structure-activity relationship of the lipase []. In one study, it was found that TA lipase from Cohnella sp. A01 was structurally determined to be 37.5%  α-helix, 12.8%  […]

library_books

Identification of protein W, the elusive sixth subunit of the Rhodopseudomonas palustris reaction center light harvesting 1 core complex

2018
Biochim Biophys Acta
PMCID: 5764122
PMID: 29126780
DOI: 10.1016/j.bbabio.2017.11.001

[…] rane helices (TMHs). Hydrophobicity profiles were performed using the ProtScale/Transmembrane Tendency application in www.expasy.org . Structural models of RPA4402 were generated using the QUARK and Robetta servers. […]

library_books

Three dimensional spatial analysis of missense variants in RTEL1 identifies pathogenic variants in patients with Familial Interstitial Pneumonia

2018
BMC Bioinformatics
PMCID: 5781290
PMID: 29361909
DOI: 10.1186/s12859-018-2010-z

[…] ationally derived homology model. To begin, we applied nine computational modeling algorithms to the protein sequence: GeneSilico [], HHpred [], I-TASSER [], M4T [], Pcons5 [], Phyre2 [], RaptorX [], Robetta [], and SWISS-MODEL []. RaptorX produced the highest-coverage model, which consisted of two well-folded domains spanning residues 1–769 and 881–1151. This model was based on seven PDB structur […]

Citations

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Robetta institution(s)
Structural Genomics of Pathogenic Protozoa, Department of Biochemistry, University of Washington, Seattle WA, USA
Robetta funding source(s)
Supported by NIH grant No. P50 GM64655 and the Howard Hughes Medical Institute.

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