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Robetta specifications

Information


Unique identifier OMICS_03868
Name Robetta
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Stability Beta
Maintained Yes

Maintainer


  • person_outline David Baker

Publication for Robetta

Robetta citations

 (214)
library_books

CHAT gene polymorphism rs3810950 is associated with the risk of Alzheimer’s disease in the Czech population

2018
J Biomed Sci
PMCID: 5950140
PMID: 29759072
DOI: 10.1186/s12929-018-0444-2

[…] ratio, ci confidence interval, the n-terminal domains (1st-126th residue) of the m isoform of chat non-mutant protein and mutant a120t of the same isoform were prepared using ab initio modelling robetta server (http://robetta.bakerlab.org/) and homology modelling software modeller []. search for hydrogen bond network was done via vmd [], schrodinger maestro software (schrodinger, l. […]

library_books

Functional domains of the FSHD associated DUX4 protein

2018
PMCID: 5936065
PMID: 29618456
DOI: 10.1242/bio.033977

[…] that we consulted include raptorx at http://raptorx.uchicago.edu/structureprediction/ () (a); metadisorder at http://genesilico.pl/metadisorder/ (); phyre2 at http://www.sbg.bio.ic.ac.uk/~phyre2 (); robetta at http://robetta.bakerlab.org (); and the eukaryotic linear motif resource at http://elm.eu.org (). each of these sites similarly predicted that regions with well-defined tertiary structure […]

library_books

Realm of Thermoalkaline Lipases in Bioprocess Commodities

2018
PMCID: 5832097
PMID: 29666707
DOI: 10.1155/2018/5659683

[…] as found in this lipase molecule []. recently, amino acid sequence of lipase from s. arlettae jpbw-1 was characterized using maldi-tof-ms analysis and comparative modelling approach was performed via robetta server to postulate a structure-activity relationship of the lipase []. in one study, it was found that ta lipase from cohnella sp. a01 was structurally determined to be 37.5%  α-helix, 12.8%  […]

library_books

Identification of protein W, the elusive sixth subunit of the Rhodopseudomonas palustris reaction center light harvesting 1 core complex

2018
Biochim Biophys Acta
PMCID: 5764122
PMID: 29126780
DOI: 10.1016/j.bbabio.2017.11.001

[…] helices (tmhs). hydrophobicity profiles were performed using the protscale/transmembrane tendency application in www.expasy.org . structural models of rpa4402 were generated using the quark and robetta servers., photosynthetic membranes were isolated from wt rps. palustris cells by rate zonal centrifugation. rc-lh1 core complexes were then purified after a further rate zonal centrifugation […]

library_books

Three dimensional spatial analysis of missense variants in RTEL1 identifies pathogenic variants in patients with Familial Interstitial Pneumonia

2018
BMC Bioinformatics
PMCID: 5781290
PMID: 29361909
DOI: 10.1186/s12859-018-2010-z

[…] derived homology model. to begin, we applied nine computational modeling algorithms to the protein sequence: genesilico [], hhpred [], i-tasser [], m4t [], pcons5 [], phyre2 [], raptorx [], robetta [], and swiss-model []. raptorx produced the highest-coverage model, which consisted of two well-folded domains spanning residues 1–769 and 881–1151. this model was based on seven pdb […]

library_books

A putative RNA binding protein from Plasmodium vivax apicoplast

2017
FEBS Open Bio
PMCID: 5794462
PMID: 29435408
DOI: 10.1002/2211-5463.12351

[…] molar ratio were analyzed with affinimeter software v2.1608 and were fitted to a 1 : 1 interaction model., the 3d model for apirbp (81–182) was built with ginzu and rosetta , as implemented in the robetta server (http://robetta.bakerlab.org). the ginzu prediction assigned the sequence to a cluster of rrm‐containing proteins, whose reference parent is the histone‐lysine n‐methyltransferase […]


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Robetta institution(s)
Structural Genomics of Pathogenic Protozoa, Department of Biochemistry, University of Washington, Seattle WA, USA
Robetta funding source(s)
Supported by NIH grant No. P50 GM64655 and the Howard Hughes Medical Institute.

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