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RobiNA | An integrated software solution for RNA-Seq-based transcriptomics

Provides a workflow for RNA-Seq-based differential gene expression (DGE) analysis. RobiNA gathers multiple packages and software with the aim of furnishing a cross-platform processing in four main steps: (i) quality assessment and filtering; (ii) mapping the reads to a user-provided reference genome or transcriptome; (iii) perform the experimental design and (iv) statistical analysis of DGE.

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RobiNA forum

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RobiNA classification

RobiNA specifications

Unique identifier:
OMICS_01411
Interface:
Graphical user interface
Input format:
FASTQ
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0, GNU Lesser General Public License version 3.0
Version:
1.2.4
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output format:
PDF
Programming languages:
Java, R
Computer skills:
Medium
Stability:
Stable

RobiNA distribution

versioning

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RobiNA support

Documentation

Maintainer

  • Marc Lohse <>

Credits

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Publications

Institution(s)

Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, Germany; RWTH Aachen University, Aachen, Germany; Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Julich, Germany

Funding source(s)

Supported by the German Ministry of Education and Research (BMBF) [project 0315912].

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.