RobiNA pipeline

RobiNA specifications

Information


Unique identifier OMICS_01411
Name RobiNA
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Input format FASTQ
Output format PDF
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, R
License GNU General Public License version 3.0, GNU Lesser General Public License version 3.0
Computer skills Medium
Version 1.2.4
Stability Stable
Requirements Bowtie, EdgeR, DeSeq
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Marc Lohse <>

Publication for RobiNA

RobiNA IN pipeline

2013
PMCID: 3759049
PMID: 23996052
DOI: 10.1038/srep02544

[…] 4 system (life technologies)., the reads were mapped against the h. seropedicae smr1 genome (nc_014323) as reference using the clc genomics workbench package. read counts table was exported into the robina software49 and both normalization and statistical evaluation of differential gene expression was performed by deseq50 with a p-value cut-off of 0.05 using the benjamini-hochberg method […]

RobiNA institution(s)
Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, Germany; RWTH Aachen University, Aachen, Germany; Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Julich, Germany
RobiNA funding source(s)
Supported by the German Ministry of Education and Research (BMBF) [project 0315912].

RobiNA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RobiNA