ROSO specifications

Information


Unique identifier OMICS_00838
Name ROSO
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Publication for ROSO

ROSO citations

 (2)
library_books

Seeds for effective oligonucleotide design

2011
BMC Genomics
PMCID: 3128067
PMID: 21627845
DOI: 10.1186/1471-2164-12-280

[…] r DNA microarrays.Many software programs have been written to construct good DNA oligonucleotides, such as ProbeSelect [], PROBESEL [], ProMide [], OligoArray [,], ArrayOligoSelector [], OligoWiz [], ROSO [], GoArrays [], and ProDesign []. One crucial issue in designing good oligonucleotides is to minimize the chance of cross-hybridization. Unsuitable regions are filtered out before checking for c […]

library_books

An evaluation of custom microarray applications: the oligonucleotide design challenge

2009
Nucleic Acids Res
PMCID: 2665234
PMID: 19208645
DOI: 10.1093/nar/gkp053

[…] y ArrayOligoSelector, OligoWiz2 and YODA succeeded in selecting 100% of the expected oligonucleotides with our design settings (). Commoligo, OligoArray and Mprime reached more than 90%. OligoPicker, ROSO and PICKY designed between 73% and 88% of our targets. Lastly, OligoFaktory was unable to design more than half of the oligonucleotides we expected. Homogeneous Tm values are ideal to increase se […]

ROSO institution(s)
Biologie Fonctionnelle, Insectes et Interactions (BF2I), UMR INRA/INSA de Lyon, Villeurbanne, France

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