RotaC statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool RotaC
info

Tool usage distribution map

This map represents all the scientific publications referring to RotaC per scientific context
info info

Associated diseases

This word cloud represents RotaC usage per disease context
info

Popular tool citations

chevron_left Viral sequence classification chevron_right
Want to access the full stats & trends on this tool?

Protocols

RotaC specifications

Information


Unique identifier OMICS_22641
Name RotaC
Interface Web user interface
Restrictions to use Academic or non-commercial use
Programming languages Java, Perl, PHP
Computer skills Basic
Version 1.0
Maintained Yes

Maintainers


  • person_outline Piet Maes
  • person_outline Jelle Matthijnssens
  • person_outline Mustafizur Rahman
  • person_outline Marc Van Ranst

Publication for RotaC

RotaC citations

 (53)
library_books

Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses

2018
mSystems
PMCID: 5964442
DOI: 10.1128/mSystems.00025-18

[…] the number of rotavirus types present in this sample. Given the amino acid similarities with both RVA and RVC types, we suggest there are at least two and possibly three types present here.Using the RotaC 2.0 typing tool for RVA and Blast-based similarity to known genotypes, we have typed the rotavirus genome segments found here (). The combined genomic makeup of the RV community in sample LI_13- […]

call_split

Emergence of Human G2P[4] Rotaviruses in the Post vaccination Era in South South Korea: Footprints of Multiple Interspecies Re assortment Events

2018
Sci Rep
PMCID: 5902508
PMID: 29662148
DOI: 10.1038/s41598-018-24511-y
call_split See protocol

[…] uences were assembled using BioEdit software (http://www.mbio.ncsu.edu/bioedit/bioedit.html). Genotype assignment for each gene was performed using BLAST (http://blast.ncbi.nlm.nih.gov/Blast.cgi) and RotaC 2.0 (http://rotac.regatools.be/). […]

library_books

Analysis of structure function relationship in porcine rotavirus A enterotoxin gene

2018
PMCID: 5799398
PMID: 28057906
DOI: 10.4142/jvs.2018.19.1.35

[…] um likelihood statistical method was applied to construct a phylogenetic tree with the selected model. Tree robustness was tested by using the bootstrap method based on 1,000 replicates. Further, the RotaC2.0 web-based tool for classification of RVA was used to determine the genotype of the NSP4 sequences []. To elucidate the genetic diversity among nsp4 genes, a haplotype network was inferred by […]

library_books

Emergence of Double and Triple Gene Reassortant G1P[8] Rotaviruses Possessing a DS 1 Like Backbone after Rotavirus Vaccine Introduction in Malawi

2018
J Virol
PMCID: 5774894
PMID: 29142125
DOI: 10.1128/JVI.01246-17

[…] strains by using both de novo and reference DNA sequence assembler algorithms implemented in Geneious software v8 (). Rotavirus genotypes were assigned to each of the 11 genome segments by using the RotaC v2.0 Web-based automated rotavirus genotyping tool (http://rotac.regatools.be/) (). […]

call_split

Faecal shedding of rotavirus vaccine in Chinese children after vaccination with Lanzhou lamb rotavirus vaccine

2018
Sci Rep
PMCID: 5772666
PMID: 29343800
DOI: 10.1038/s41598-018-19469-w
call_split See protocol

[…] s from samples with the highest viral loads were amplified and sequenced. All primers used are listed in Supplementary TableĀ . Virus genotype and nucleotide sequence similarities were analysed by the RotaC v2.0 (http://rotac.regatools.be/) automated genotyping tool and BLASTn (http://www.ncbi.nlm.nih.gov/). […]

library_books

Analysis of NSP4 Gene and Its Association with Genotyping of Rotavirus Group A in Stool Samples

2018
PMCID: 5712384
PMID: 28693095
DOI: 10.22034/ibj.22.1.42

[…] mples may be significant.However, RV genome is segmented, and evolution of each segment can be analyzed for G or P typing[,]. As a result, genotyping of NSP4 gene in the samples was carried out using RotaC2.0 web server, and E1 and E2 genotypes were identified. From 27 sequences samples, E1 (20 cases, ~77%) and E2 (6 cases, ~23%) were obtained. In general, E1 and E2 genotypes are dominant E genoty […]


Want to access the full list of citations?
RotaC institution(s)
Clinical Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven, Leuven, Belgium
RotaC funding source(s)
Supported by a postdoctoral grant from the 'Fonds voor Wetenschappelijk Onderzoek (FWO)-Vlaanderen'; by the Institute for the Promotion and Innovation through Science and Technology in Flanders (IWT Vlaanderen).

RotaC reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RotaC