RotaC protocols

RotaC specifications

Information


Unique identifier OMICS_22641
Name RotaC
Interface Web user interface
Restrictions to use Academic or non-commercial use
Programming languages Java, Perl, PHP
Computer skills Basic
Version 1.0
Maintained Yes

Maintainers


  • person_outline Piet Maes <>
  • person_outline Jelle Matthijnssens <>
  • person_outline Mustafizur Rahman <>
  • person_outline Marc Van Ranst <>

Publication for RotaC

RotaC IN pipelines

 (23)
2017
PMCID: 5214804
PMID: 28070453
DOI: 10.7717/peerj.2733

[…] further analysis and deposited in genbank under accession numbers: kx954616– kx954624., the genotypes for each of the eleven gene segments were determined using the online rotavirus genotyping tool, rotac (http://rotac.regatools.be) (maes et al., 2009). sequences were aligned and the most optimal nucleotide substitution model was determined in mega 5 (tamura et al., 2011). maximum likelihood […]

2017
PMCID: 5214804
PMID: 28070453
DOI: 10.7717/peerj.2733

[…] and deposited in genbank under accession numbers: kx954616– kx954624., the genotypes for each of the eleven gene segments were determined using the online rotavirus genotyping tool, rotac (http://rotac.regatools.be) (maes et al., 2009). sequences were aligned and the most optimal nucleotide substitution model was determined in mega 5 (tamura et al., 2011). maximum likelihood phylogenetic tree […]

2017
PMCID: 5480867
PMID: 28640820
DOI: 10.1371/journal.pone.0178855

[…] virology project team who blindly and independently assembled the sequence reads on clc command-line assembly module (clc bio’s clc_novo assemble and clc bio’s clc_ref_assemble_long_program) [35]., rotac version 2 (http://rotac.regatools.be/) [36], a classification tool for rvas, was used to assign genotypes to all eleven genome segments. the nucleotide sequences generated in this study […]

2017
PMCID: 5480867
PMID: 28640820
DOI: 10.1371/journal.pone.0178855

[…] blindly and independently assembled the sequence reads on clc command-line assembly module (clc bio’s clc_novo assemble and clc bio’s clc_ref_assemble_long_program) [35]., rotac version 2 (http://rotac.regatools.be/) [36], a classification tool for rvas, was used to assign genotypes to all eleven genome segments. the nucleotide sequences generated in this study were deposited into the ncbi […]

2017
PMCID: 5702219
PMID: 29178883
DOI: 10.1186/s12917-017-1280-4

[…] 2.9 (roche). the geneious software suite v 9.0.5 (biomatters ltd, auckland, new zeland) was used for visualization and final data analysis. to obtain the genomic constellation of the rva strain, the rotac v 2.0 online automated genotyping tool [14] was used to assign the genotype of each genome segment., selected sequences of rva deposited in genbank, with complete genome and genotype relevant […]

RotaC institution(s)
Clinical Virology, Rega Institute for Medical Research, Katholieke Universiteit Leuven, Leuven, Belgium
RotaC funding source(s)
Supported by a postdoctoral grant from the 'Fonds voor Wetenschappelijk Onderzoek (FWO)-Vlaanderen'; by the Institute for the Promotion and Innovation through Science and Technology in Flanders (IWT Vlaanderen).

RotaC reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review RotaC