RoVerGeNe specifications

Information


Unique identifier OMICS_08800
Name RoVerGeNe
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Version 3.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Grégory Batt <>

Publication for RoVerGeNe

RoVerGeNe in publications

 (4)
PMCID: 4721667
PMID: 26795950
DOI: 10.1371/journal.pcbi.1004591

[…] that widely used mathematical platforms, such as matlab [] and simulink [,], enable the user to model and simulate hybrid systems. other relevant tools for hybrid systems modeling in biology are rovergene [], biodivine [,,], breach [,], dreach [,], and s-taliro []., continuous state deterministic spatiotemporal systems (see : third row) are generally formulated in terms […]

PMCID: 3684516
PMID: 23663447
DOI: 10.1186/1754-1611-7-13

[…] (http://www.mpi-magdeburg.mpg.de/projects/promot), protobiocompiler (http://proto.bbn.com/proto/proto.html), rbs calculator (https://salis.psu.edu/software), rosetta (http://www.rosettacommons.org), rovergene (http://iasi.bu.edu/~batt/rovergene/rovergene.htm), simbiology - matlab (http://www.mathworks.com/products/simbiology), synbioss (http://www.synbioss.org), tinkercell […]

PMCID: 2813247
PMID: 20042075
DOI: 10.1186/1471-2105-10-450

[…] the service-oriented architecture to other modeling and simulation tools. a variety of tools have been used in combination with model checkers, such as ginsim  [], ina [], biocham  [], gna  [] or rovergene  [], based on formalisms like boolean and other logical models [-], petri nets [,,] or ordinary differential equations [,]. in order to integrate new modeling and simulation tools […]

PMCID: 2732592
PMID: 19566953
DOI: 10.1186/1752-0509-3-66

[…] gene network with respect to parameter variations []. this approach has the capability to search for parameter sets for which a given property is satisfied, using a publicly available tool called rovergene. recently, several gene circuit design methods have been introduced to implement some circuits into or delete some circuits from an existing gene network to modify its structure […]


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RoVerGeNe institution(s)
Centers for Information and Systems Engineering and for BioDynamics, Boston University, Boston, MA, USA

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