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Roxygen specifications


Unique identifier OMICS_14911
Name Roxygen
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.1-3
Stability Stable
stringr, tools, brew, digest
Source code URL
Maintained No




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Roxygen citations


SplinectomeR Enables Group Comparisons in Longitudinal Microbiome Studies

Front Microbiol
PMCID: 5924793
PMID: 29740416
DOI: 10.3389/fmicb.2018.00785

[…] allow flexibility for more advanced users with particular needs and unique data shapes., the splinectomer code was written in r version 3.4.0, and the package was built in rstudio using devtools and roxygen2 to generate and populate the package documentation (; ). splinectomer is open-source and freely available on github at the figures generated […]


Methods for enhancing the reproducibility of biomedical research findings using electronic health records

BioData Min
PMCID: 5594436
PMID: 28912836
DOI: 10.1186/s13040-017-0151-7

[…] of the executed code (e.g. plots, summary tables, analysis results) alongside the original code snippets and documentation (fig. ). , the most popular modern day literate programming tool in r is roxygen [] while popular report generation packages are knitr [] and sweave []. another widely used tool is jupyter [], which is often used with (but not limited to) python. for example, johnson et […]


exampletestr—An easy start to unit testing R packages

Wellcome Open Res
PMCID: 5500893
PMID: 28748220
DOI: 10.21956/wellcomeopenres.12567.r22849

[…] for developers to add unit tests to their own package. they do this by drawing from examples provided in the .rd documentation. as such, the exampletestr package is automatically compatible with roxygen2. importantly, the authors outline unit tests using the testthat package, the standard unit testing package. these features make exampletestr consistent with best practices for r package […]

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Roxygen institution(s)
Department of Statistics, Ludwig-Maximilians-Universität Munich, Germany

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