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Rp-Bp specifications


Unique identifier OMICS_20323
Name Rp-Bp
Alternative name Ribosome profiling with Bayesian predictions
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data The predicted ORFs, as well as DNA and protein files containing the predicted sequences.
Output format BED, FASTA
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.1.9
Stability Stable
Maintained Yes




No version available



  • person_outline Christoph Dieterich
  • person_outline Brandon Malone

Publication for Ribosome profiling with Bayesian predictions

Rp-Bp citations


Women’s health status in urban Ghana: dimensions and differentials using short form 36

PMCID: 5926535
PMID: 29690865
DOI: 10.1186/s12955-018-0894-y

[…] l could not be statistically differentiated at p < 0.05. The educational group variations showed that among respondents with no formal education, a higher proportion scored their health lowest on GH, RP, BP and VT.The results of the associations between each of the eight health sub-scales and wealth status of the individual reveals that average score for the health sub-scales did not vary much by […]


Evaluating the reliability and validity of SF 8 with a large representative sample of urban Chinese

PMCID: 5883873
PMID: 29615060
DOI: 10.1186/s12955-018-0880-4

[…] the total variance. The proportions of the variances explained were 49.4%, 11.9%, and 11.4%, and the eigenvalues were 3.9, 1.0, and 1.0 for the 3 factors, respectively. The first factor included PF, RP, BP and GH, the items pertaining to physical health. The second factor included SF, RE, and MH, the items pertaining to mental health. The third factor included GH and VT, the items pertaining to o […]


Translation and validation of the Simplified Chinese version of Western Ontario Osteoarthritis of the Shoulder Index (WOOS)

PMCID: 5895419
PMID: 29595694
DOI: 10.1097/MD.0000000000008691

[…] ing validity. The SC-WOOS and these 2 instruments were compared by calculating Pearson correlation coefficient (r). As hypothesized, SC-WOOS was well correlated with OSS and 3 subscales of SF-36 (PF, RP, BP), which showed good convergence. Poor correlations between the SC-WOOS and VT, RE, and MH of SF-36 indicated good divergence. Good divergence and convergence proved that SC-WOOS was well correl […]


Interview based malnutrition assessment can predict adverse events within 6 months after primary and revision arthroplasty – a prospective observational study of 351 patients

PMCID: 5856317
PMID: 29544497
DOI: 10.1186/s12891-018-2004-z

[…] ectively the nutritional status (with or without risk for malnutrition) at T1. HRQL is preoperatively decreased for both nutritional groups (with or without risk for malnutrition), especially for PF, RP, BP, VT and RE. Moreover, patients being at risk for malnutrition before surgery show statistically significant lower values - according mainly to SF-MNA and MNA - in all physical (PF, RP, BP, GH) […]


Re evaluation of the definition of remission on the 17 item Hamilton Depression Rating Scale based on recovery in health related quality of life in an observational post marketing study

PMCID: 5771202
PMID: 29338728
DOI: 10.1186/s12955-018-0838-6

[…] associated with remitters (responders) or non-remitters (non-responders) defined using the HAM-D17 scores.3) Mann-Whitney U tests were conducted to compare the domain subscores of HRQOL (SF-36) (PF, RP, BP, GH, VT, SF, RE, MH, PCS, and MCS) and STAI (the State Anxiety Scale and the Trait Anxiety Scale) between remitters (responders) or non-remitters (non-responders) using the recalculated cutoff […]


Patients With Intermittent Claudication and Chronic Widespread Pain Improves in Health Related Quality of Life After Invasive but Not After Noninvasive Treatment

PMCID: 5751902
PMID: 29308018
DOI: 10.1177/1179546817747528

[…] ower baseline values of SF-36; BP, GH, VT, SF, RE, and MH scores than patients without CWP, and corresponding differences were seen among noninvasively treated patients concerning baseline SF-36; PF, RP, BP, GH, VT, SF, and MH (), whereas no such differences were seen for EQ5D or WIQ. […]


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Rp-Bp institution(s)
Section of Bioinformatics and Systems Cardiology, Department of Internal Medicine III and Klaus Tschira Institute for Integrative Computational Cardiology, University of Heidelberg, Heidelberg, Germany; DZHK (German Centre for Cardiovascular Research), Partner site Heidelberg/Mannheim, Heidelberg, Germany; Max Plank Institute for the Biology of Ageing, Koln, Germany; Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland; Faculty of Science, University of Basel, Basel, Switzerland
Rp-Bp funding source(s)
Supported by the Klaus Tschira Stiftung GmbH [00.219b.2013]; the Swiss National Science Foundation through the NCCR RNA & Disease, and the European Union Seventh Framework Programme (FP7/2007-2013) under grant agreement no. 241985 (European Research Council “miRTurn”).

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