RPFOLD pipeline

RPFOLD specifications

Information


Unique identifier OMICS_06648
Name RPFOLD
Alternative name Protein Fold Recognition
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

RPFOLD IN pipelines

 (7)
2018
PMCID: 5788867
PMID: 29379064
DOI: 10.1038/s41598-018-20137-2

[…] antibody (fig. 1d). this indicated that the trypsin action did not affect the exposure of the neutralizing epitopes., the 3d structure models of all the proteins were predicted using phyre2 protein fold recognition server. after refinement and quality assessment, only the best ranked models were selected for further analysis. the protein–protein docking was performed using z-dock, […]

2017
PMCID: 5622079
PMID: 28963468
DOI: 10.1038/s41467-017-00785-0

[…] 1064–1176) domains27 (fig. 2a). we modeled human lrs structure from the crystal structure of trnaleu-bound pyrococcus horikoshii lrs (pdb 1wz2b) (32% sequence identity and 89% coverage), using the protein fold recognition server phyre2 (fig. 2a). the modeled structure showed domain arrangement similar to those of other species28–31 in which the cd and abd domains are tightly packed and the cp1 […]

2015
PMCID: 4627185
PMID: 26605246
DOI: 10.4103/2277-9175.166164

[…] or mrph, no significant changes were observed., furthermore, the study of protein secondary structure plays an important role in the prediction of protein —3d structure with the ab initio method or protein fold recognition by providing additional constraints.[31], the predicted 3d structure will provide more insight in understanding the structure and function of the proteins. moreover, […]

2014
PMCID: 4330267
PMID: 25705171
DOI: 10.5808/GI.2014.12.4.283

[…] structure of both wild-type and mutant kir6.2 was predicted using discovery studio 3.5. the tertiary structure prediction for kir6.2 models (both wild type and mutant) were performed using the protein fold recognition server phyre2 (http://www.sbg.bio.ic.ac.uk/phyre2/) with 100% confidence. the predicted models were energetically minimized in modrefiner […]

2010
PMCID: 2877894
PMID: 20378667
DOI: 10.1093/jxb/erq072

[…] was conducted as described previously (baxter et al., 2008) using the crystallized structure of the cytoplasmic c-terminus of invertebrate cngc, spih (flynn et al., 2007, pdb no. 2ptm). the protein fold recognition server (phyre; kelley and sternberg, 2009) was used to model the protein coordinates with estimated precision of 100%. all the images were generated using pymol (delano, […]

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