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RPI-Pred specifications


Unique identifier OMICS_07245
Name RPI-Pred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for RPI-Pred

RPI-Pred citations


A Brief Review of RNA–Protein Interaction Database Resources

Noncoding RNA
PMCID: 5832006
PMID: 29657278
DOI: 10.3390/ncrna3010006

[…] genes based on mirna-mediated regulatory networks. it will be a valuable resource for all rna interactions that involve rnas and proteins as regulators., rna–protein interaction predictor (rpi-pred) [] is a ncrna–protein interaction prediction tool based on sequence and structural information of rna and protein. the web server can not only predict rna–protein interactions using […]


A Bipartite Network based Method for Prediction of Long Non coding RNA–protein Interactions

PMCID: 4792848
PMID: 26917505
DOI: 10.1016/j.gpb.2016.01.004

[…] named lncpro, which uses secondary structure, hydrogen bond, van der waals force features, and yields the prediction score using fisher’s linear discriminate method. later on, an approach named rpi-pred was developed by suresh et al. , they trained svm-based approach, by extracting sequence and high-order 3d structure features of lncrnas and proteins., all the aforementioned methods […]


Conserved Molecular Underpinnings and Characterization of a Role for Caveolin 1 in the Tumor Microenvironment of Mature T Cell Lymphomas

PLoS One
PMCID: 4643970
PMID: 26566034
DOI: 10.1371/journal.pone.0142682

[…] concerning the interaction potential of linc00273 in cav1-interaction networks. the lncpro [], rpiseq (both random forrest [rpiseq-rf] and support vector machine [rpiseq-svm] output) [], and rpi-pred [] programs were used in the abovementioned rpi-prediction analysis. of the 43 proteins evaluated for rpi, lncpro scored 100% of potential proteins as interacting, rpiseq-rf scored 100% […]


Potential role of lncRNA cyp2c91–protein interactions on diseases of the immune system

Front Genet
PMCID: 4516971
PMID: 26284111
DOI: 10.3389/fgene.2015.00255

[…] that lncrna–protein interactions play an important role in regulating post-transcriptional changes and subsequent localization of the transcript, we used rna–protein interaction predictor (rpi-pred) to predict whether or not the proteins encoded by these genes and the rna form interaction pairs (). from these networks and genbank annotation, we observed that cyp2c91, a lncrna interacts […]


Conserved Functional Motifs and Homology Modeling to Predict Hidden Moonlighting Functional Sites

Front Bioeng Biotechnol
PMCID: 4460814
PMID: 26106597
DOI: 10.3389/fbioe.2015.00082

[…] mdockpp (huang and zou, ) that predict protein–protein docking; itscore-pr, which uses an iterative method based on experimentally determined rna–protein complex interactions (huang and zou, ); and rpi-pred that predicts protein–rna interactions based on sequence and structural information (suresh et al., ). all such approaches provide predictions and it is important to undertake appropriate […]


Revealing protein–lncRNA interaction

Brief Bioinform
PMCID: 4719072
PMID: 26041786
DOI: 10.1093/bib/bbv031

[…] machine learning algorithms or ad hoc scoring systems are used for evaluating the binding potential of a novel pair. rpiseq [], catrapid [], the method described in wang et al. [], lncpro [] and rpi-pred [] all follows these lines. the recent pripu method [] differs from the others by using statistical learning methods trained on only positive examples. the oli suite [] trains […]

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RPI-Pred institution(s)
Department of Radiology, Wake Forest University Health Science, Medical Center Boulevard, Winston-Salem, NC, USA

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