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RPISeq

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A family of classifiers for predicting RNA-protein interactions using only sequence information. Given the sequences of an RNA and a protein as input, RPIseq predicts whether or not the RNA-protein pair interact. The RNA sequence is encoded as a normalized vector of its ribonucleotide 4-mer composition, and the protein sequence is encoded as a normalized vector of its 3-mer composition, based on a 7-letter reduced alphabet representation. RPISeq offers an inexpensive method for computational construction of RNA-protein interaction networks, and should provide useful insights into the function of non-coding RNAs.

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1 user review

1 user review

shradha suyal's avatar image

shradha suyal

I had used this server http://pridb.gdcb.iastate.edu/RPISeq/ for my study. but it is no longer available.

RPISeq forum

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RPISeq classification

RPISeq specifications

Interface:
Web user interface
Input data:
Protein sequence, RNA sequence
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Input format:
Raw
Stability:
Stable

RPISeq support

Maintainer

  • Usha K. Muppirala <>

Credits

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Publications

Institution(s)

Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA, USA; Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA; Department of Computer Science, Iowa State University, Ames, IA, USA

Link to literature

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