RPPanalyzer statistics

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RPPanalyzer specifications

Information


Unique identifier OMICS_00815
Name RPPanalyzer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.4.5
Stability Stable
Requirements
limma, methods, gplots, grid, graphics, Biobase, utils, stats4, lattice, ggplot2, quantreg, R(≥2.14), gam, Hmisc
Maintained Yes

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Documentation


Maintainer


  • person_outline Astrid Wachter <>

Publications for RPPanalyzer

RPPanalyzer in publications

 (7)
PMCID: 5637318
PMID: 29020998
DOI: 10.1186/s13058-017-0905-7

[…] scanner (li-cor, biosciences). signal intensities of individual spots were quantified using genepixpro 7.0 (molecular services inc.). data preprocessing and quality control were performed using the rppanalyzer r-package []., immunohistochemical analyses (ihc) were performed on 4-μm tissue sections. protein expression was assessed using bond max polymer refine immunohistochemistry protocol. […]

PMCID: 4580386
PMID: 25989275
DOI: 10.1038/bjc.2015.165

[…] same diluent, was used as a housekeeping protein to control protein loading. protein signals were determined with background subtraction and normalisation to the internal housekeeping targets using rppanalyzer, a module within the r statistical language on the cran (http://cran.r-project.org/)., spss 21.0 ibm statistical software (ibm corporation, new york, ny, usa) was used for different […]

PMCID: 4210132
PMID: 25347188
DOI: 10.1371/journal.pone.0111006

[…] with the odyssey nir scanner (li-cor biosciences, bad homburg, germany). image analysis was carried out with genepix-pro 6.0 (axon instruments, sunnyvale, usa). data sets were analyzed using the rppanalyzer package . quantification results were normalized to the fast green fcf staining of total proteins as well as to the median antibody binding signal levels ., to verify antibody […]

PMCID: 3432516
PMID: 22969728
DOI: 10.3389/fphys.2012.00339

[…] on-slide protein quantification the total protein content of single spots was determined according to the fast green-fcf assay (loebke et al., )., data analysis was performed using the software tool rppanalyzer (mannsperger et al., ) implemented in the statistical environment r. arrays with signal intensities not significantly above blank readings as well as arrays without a linear correlation […]

PMCID: 3520501
PMID: 22908218
DOI: 10.1093/biostatistics/kxs026

[…] tps show how sequential designs adapt to the observed data to correct prior mis-specifications. fig. 3., we design a follow-up study for the rppa dataset dataiii that is included in the r package rppanalyzer (). the data contain expression for 75 proteins and 35 stage 2 and 25 stage 3 samples. both models, the nn and gaga models provide a reasonable fit (supplementary material available […]


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RPPanalyzer institution(s)
Department of Molecular Genome Analysis, German Cancer Research Center Heidelberg; Department of Medical Statistics, Georg-August-University Goettingen, Germany

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