rQuant specifications

Information


Unique identifier OMICS_01286
Name rQuant
Alternative name rQuant.web
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2.1
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Gunnar Rätsch <>
  • person_outline Regi Bohnert <>
  • person_outline Regina Bohnert <>

Additional information


Web app: https://galaxy.inf.ethz.ch/

Information


Unique identifier OMICS_01286
Name rQuant
Alternative name rQuant.web
Interface Web user interface
Restrictions to use None
Input data The annotation file containing the necessary information about the transcripts that are to be quantified and the alignment file, which stores the read alignments in a compressed format.
Input format GFF, BAM
Output data A file with the attributes ARC and RPKM that describe the abundance of a transcript in ARC (estimated average read coverage) and RPKM (reads per kilobase of exon model per million mapped reads), respectively.
Output format GFF3
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Gunnar Rätsch <>
  • person_outline Regi Bohnert <>
  • person_outline Regina Bohnert <>

Additional information


Web app: https://galaxy.inf.ethz.ch/

Publications for rQuant

rQuant institution(s)
Friedrich Miescher Laboratory of the Max Planck Society, Tübingen, Germany

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