rQuant specifications

Unique identifier:
OMICS_01286
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Stability:
Stable
Alternative name:
rQuant.web
Interface:
Command line interface
Operating system:
Unix/Linux
Version:
2.1
Maintained:
Yes

versioning

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No versioning.

rQuant specifications

Unique identifier:
OMICS_01286
Interface:
Web user interface
Input data:
The annotation file containing the necessary information about the transcripts that are to be quantified and the alignment file, which stores the read alignments in a compressed format.
Output data:
A file with the attributes ARC and RPKM that describe the abundance of a transcript in ARC (estimated average read coverage) and RPKM (reads per kilobase of exon model per million mapped reads), respectively.
Computer skills:
Basic
Maintained:
Yes
Alternative name:
rQuant.web
Restrictions to use:
None
Input format:
GFF, BAM
Output format:
GFF3
Stability:
Stable

rQuant support

Maintainers

  • Gunnar Rätsch <>
  • Regi Bohnert <>
  • Regina Bohnert <>
  • Gunnar Rätsch <>
  • Regi Bohnert <>
  • Regina Bohnert <>

Additional information

Web app: https://galaxy.inf.ethz.ch/

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Credits

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Publications

Institution(s)

Friedrich Miescher Laboratory of the Max Planck Society, Tübingen, Germany

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