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chevron_left Bioinformatics workflows DNA methylation visualization Read alignment Methylation scoring Differentially methylated region detection Methylation annotation chevron_right

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RRBS-Analyser specifications


Unique identifier OMICS_02632
Name RRBS-Analyser
Interface Web user interface
Restrictions to use None
Input format FASTQ reads, generic SAM format, self-defined format containing individual 5mC sites
Computer skills Basic
Stability No
Maintained No


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Publication for RRBS-Analyser

RRBS-Analyser citation


Acetylation of hMOF Modulates H4K16ac to Regulate DNA Repair Genes in Response to Oxidative Stress

PMCID: 5555109
PMID: 28808424
DOI: 10.7150/ijbs.17260

[…] the libraries according to the manufacturer's protocol. paired-end short reads were generated from cells (with or without h2o2 treatment) via hiseq2000 sequencing. our published integrated software rrbs-analyser was used to perform quality control, align the reads to the reference genome, identify methylated cytosines, and identify differentially methylated regions. results indicated […]

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RRBS-Analyser institution(s)
Institute of Genomic Medicine, Wenzhou Medical University, Wenzhou, China; Division of Rheumatology, First Affiliated Hospital, Wenzhou Medical University, Wenzhou, China; Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China; Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, China

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