RRBS-Analyser statistics
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Read alignment
Methylation scoring
Differentially methylated region detection
Data visualization
Methylation annotation
Bioinformatics workflows
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RRBS-Analyser specifications
Information
| Unique identifier | OMICS_02632 |
|---|---|
| Name | RRBS-Analyser |
| Interface | Web user interface |
| Restrictions to use | None |
| Input format | FASTQ reads, generic SAM format, self-defined format containing individual 5mC sites |
| Computer skills | Basic |
| Stability | No |
| Maintained | No |
Maintainer
This tool is not available anymore.
Publication for RRBS-Analyser
library_books
RRBS-analyser: a comprehensive web server for reduced representation bisulfite sequencing data analysis.
2013 Hum Mutat
PMID: 24106010
RRBS-Analyser in publication
library_books
Acetylation of hMOF Modulates H4K16ac to Regulate DNA Repair Genes in Response to Oxidative Stress
PMCID: 5555109
PMID: 28808424
DOI: 10.7150/ijbs.17260
[…] the libraries according to the manufacturer's protocol. paired-end short reads were generated from cells (with or without h2o2 treatment) via hiseq2000 sequencing. our published integrated software rrbs-analyser was used to perform quality control, align the reads to the reference genome, identify methylated cytosines, and identify differentially methylated regions. results indicated […]
RRBS-Analyser institution(s)
Institute of Genomic Medicine, Wenzhou Medical University, Wenzhou, China; Division of Rheumatology, First Affiliated Hospital, Wenzhou Medical University, Wenzhou, China; Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China; Hefei National Laboratory for Physical Sciences at Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, China
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