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RReportGenerator specifications

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Unique identifier OMICS_15030
Name RReportGenerator
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Medium
Version 1.3.3
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Wolfgang Raffelsberger <>

Publication for RReportGenerator

RReportGenerator in publications

 (3)
PMCID: 4259356
PMID: 25485970
DOI: 10.1371/journal.pone.0114530

[…] replicates were performed for all experimental groups except sham-operated bones and ep156t xenografts, which were done in duplicates. quality control of the microarray data was performed using rreportgenerator and confirmed that all arrays used in the study were of good and consistent quality. raw data are available on geo (gse22813). we computed statistical significance using […]

PMCID: 4027216
PMID: 24682826
DOI: 10.1093/nar/gku217

[…] characteristic apoptotic nuclei condensation. finally, the gfp nuclear signal was analyzed to determine the efficiency of hr as reported by the dr-gfp iscei construct. following image analysis, the rreportgenerator software was used to determine control-based normalized hdr frequencies in treated and selected cells (). a hit was defined as activator or repressor when its normalized value […]

PMCID: 3235162
PMID: 22174898
DOI: 10.1371/journal.pone.0028791

[…] 12 14, 15 and 35. the rna were used to generate biotin-labeled crna probes hybridized to the affymetrix human genome u133 plus 2.0 array or mouse genome u74abc. quality control (qc) performed using rreportgenerator ()., differential gene expression in the transcriptome of rd was determined on gcrma normalized data using moderated t-test and local false discovery rate (fdr) or mutual […]

RReportGenerator institution(s)
Laboratoire de Bioinformatique et Génomique Intégratives, IGBMC, UMR 7104, Illkirch, France; Plate-forme ‘Puces à Cellules Transfectées’, LBGS, CEBGS-IGBMC, Illkirch, France
RReportGenerator funding source(s)
This project was supported through the European Retinal Research Training Network ‘RETNET’ (MRTN-CT-2003-504003), EVI-Genoret (LSHG-CT-2005- 512036), INSERM, CNRS, ULP, Region Alsace, Conseil Général du Bas Rhin, CUS and Cancéropôle Grand Est.

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