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RReportGenerator specifications

Information


Unique identifier OMICS_15030
Name RReportGenerator
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Medium
Version 1.3.3
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Wolfgang Raffelsberger

Publication for RReportGenerator

RReportGenerator citations

 (4)
library_books

The Molecular Signature of the Stroma Response in Prostate Cancer Induced Osteoblastic Bone Metastasis Highlights Expansion of Hematopoietic and Prostate Epithelial Stem Cell Niches

2014
PLoS One
PMCID: 4259356
PMID: 25485970
DOI: 10.1371/journal.pone.0114530

[…] Three replicates were performed for all experimental groups except sham-operated bones and Ep156T xenografts, which were done in duplicates. Quality control of the microarray data was performed using RReportGenerator and confirmed that all arrays used in the study were of good and consistent quality. Raw data are available on GEO (GSE22813). We computed statistical significance using the standard […]

call_split

A high throughput chemical screen with FDA approved drugs reveals that the antihypertensive drug Spironolactone impairs cancer cell survival by inhibiting homology directed repair

2014
Nucleic Acids Res
PMCID: 4027216
PMID: 24682826
DOI: 10.1093/nar/gku217
call_split See protocol

[…] e characteristic apoptotic nuclei condensation. Finally, the GFP nuclear signal was analyzed to determine the efficiency of HR as reported by the DR-GFP IsceI construct. Following image analysis, the RReportGenerator software was used to determine control-based normalized HDR frequencies in treated and selected cells (). A hit was defined as activator or repressor when its normalized value deviate […]

library_books

Transcriptomic Analysis of Human Retinal Detachment Reveals Both Inflammatory Response and Photoreceptor Death

2011
PLoS One
PMCID: 3235162
PMID: 22174898
DOI: 10.1371/journal.pone.0028791

[…] , 12 14, 15 and 35. The RNA were used to generate biotin-labeled cRNA probes hybridized to the Affymetrix Human genome U133 plus 2.0 array or Mouse genome U74abc. Quality Control (QC) performed using RReportGenerator (). […]

library_books

RETINOBASE: a web database, data mining and analysis platform for gene expression data on retina

2008
BMC Genomics
PMCID: 2386825
PMID: 18457592
DOI: 10.1186/1471-2164-9-208

[…] Quality control reports are generated using affyQCReport – an R package that generates quality control reports for Affymetrix array data [] and RReportGenerator [] for all experiments, where .CEL files are available. In addition, we also calculate a coefficient of variation for individual Probe Sets between the replicates, which provides a di […]

Citations

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RReportGenerator institution(s)
Laboratoire de Bioinformatique et Génomique Intégratives, IGBMC, UMR 7104, Illkirch, France; Plate-forme ‘Puces à Cellules Transfectées’, LBGS, CEBGS-IGBMC, Illkirch, France
RReportGenerator funding source(s)
This project was supported through the European Retinal Research Training Network ‘RETNET’ (MRTN-CT-2003-504003), EVI-Genoret (LSHG-CT-2005- 512036), INSERM, CNRS, ULP, Region Alsace, Conseil Général du Bas Rhin, CUS and Cancéropôle Grand Est.

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