rRNASelector statistics

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Associated diseases

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rRNASelector specifications

Information


Unique identifier OMICS_02620
Name rRNASelector
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability No
Maintained No

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Publication for rRNASelector

rRNASelector in publications

 (2)
PMCID: 4726098
PMID: 26778510
DOI: 10.1038/srep19233

[…] biopython and trimmomatic, clustered to remove duplicates using uclust , and repeats are masked using repeatmasker. paired end reads are joined using seqprep. potential rrna genes are found using rrnaselector, and the taxonomy is predicted from these using qiime against rdp and greengenes. protein coding genes are predicted using fraggenescan, and the functional annotations are added using […]

PMCID: 4678780
PMID: 26602607
DOI: 10.1016/j.gpb.2015.10.003

[…] ena’s webin tool or isacreator. the ebi metagenomics analysis pipeline includes trimming and quality checks to remove artifacts and streamline of the data. the processed reads are analyzed by rrnaselector and qiime to predict taxa, followed by functional assignment by a composite protein database called interproscan. ebi metagenomics is well suited for the analysis of shotgun […]


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rRNASelector institution(s)
Interdisciplinary Graduate Program in Bioinformatics, Seoul National University, Seoul, Korea

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