RSCU_RS specifications

Information


Unique identifier OMICS_22286
Name RSCU_RS
Alternative name Relative Synonymous Codon Usage for Ribo-Seq data
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The reference transcriptome (a file of all mRNA sequences), a file containing the Ribo-seq reads mapped on a reference transcriptome and the corresponding transcriptome annotation.
Input format FASTA+SAM+GFF
Operating system Unix/Linux
Programming languages Java
License CeCILL version 2.1
Computer skills Advanced
Stability Stable
Requirements
Java Runtime Environment
Maintained Yes

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Maintainer


  • person_outline Eric Rivals <>

Publication for Relative Synonymous Codon Usage for Ribo-Seq data

RSCU_RS institution(s)
Department of Computer Science, Laboratoire d’Informatique, de Robotique et de Microélectronique de Montpellier (LIRMM), CNRS et Université de Montpellier, Montpellier, France; Institut de Biologie Computationnelle (IBC), Université de Montpellier, France; Cancer Biology Department, Institut de Génomique Fonctionnelle, CNRS, INSERM, Université de Montpellier, Montpellier, France
RSCU_RS funding source(s)
Supported by the Fondation pour la Recherche Medicale, grant DBI20131228574, ANR grant (ANR-11-BINF-0002).

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