rSeqDiff statistics

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Citations per year

Number of citations per year for the bioinformatics software tool rSeqDiff

Tool usage distribution map

This map represents all the scientific publications referring to rSeqDiff per scientific context
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rSeqDiff specifications


Unique identifier OMICS_01968
Name rSeqDiff
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format RATES
Output format RDATA + CSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.1
Stability Beta
Maintained Yes


No version available

Publication for rSeqDiff

rSeqDiff citation


A survey of best practices for RNA seq data analysis

Genome Biol
PMCID: 4728800
PMID: 26813401
DOI: 10.1186/s13059-016-0881-8

[…] ulative transcript graphs from mapped exon reads and junction reads to infer isoforms and the Jensen-Shannon divergence to measure the difference []. Recently, Shi and Jiang [] proposed a new method, rSeqDiff, that uses a hierarchical likelihood ratio test to detect differential gene expression without splicing change and differential isoform expression simultaneously. All these approaches are gen […]

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rSeqDiff institution(s)
Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA

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