rSeqDiff statistics

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Citations per year

Number of citations per year for the bioinformatics software tool rSeqDiff
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Tool usage distribution map

This map represents all the scientific publications referring to rSeqDiff per scientific context
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Associated diseases

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Popular tool citations

chevron_left Normalization Differential expression Alternative splicing events identification chevron_right
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rSeqDiff specifications

Information


Unique identifier OMICS_01968
Name rSeqDiff
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format RATES
Output format RDATA + CSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.1
Stability Beta
Requirements
rSeq
Maintained Yes

Versioning


No version available

Publication for rSeqDiff

rSeqDiff citation

library_books

A survey of best practices for RNA seq data analysis

2016
Genome Biol
PMCID: 4728800
PMID: 26813401
DOI: 10.1186/s13059-016-0881-8

[…] ulative transcript graphs from mapped exon reads and junction reads to infer isoforms and the Jensen-Shannon divergence to measure the difference []. Recently, Shi and Jiang [] proposed a new method, rSeqDiff, that uses a hierarchical likelihood ratio test to detect differential gene expression without splicing change and differential isoform expression simultaneously. All these approaches are gen […]


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rSeqDiff institution(s)
Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA

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