rSeqDiff protocols

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rSeqDiff specifications

Information


Unique identifier OMICS_01968
Name rSeqDiff
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format RATES
Output format RDATA + CSV
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.1
Stability Beta
Requirements
rSeq
Maintained Yes

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Publication for rSeqDiff

rSeqDiff in pipeline

2016
PMCID: 4728800
PMID: 26813401
DOI: 10.1186/s13059-016-0881-8

[…] transcript graphs from mapped exon reads and junction reads to infer isoforms and the jensen-shannon divergence to measure the difference []. recently, shi and jiang [] proposed a new method, rseqdiff, that uses a hierarchical likelihood ratio test to detect differential gene expression without splicing change and differential isoform expression simultaneously. all these approaches […]


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rSeqDiff institution(s)
Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA

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