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SNP detection
Read quality control
Differential expression
Alignment evaluation
Known transcript quantification
Normalization
Gene expression visualization
Bioinformatics workflows
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RseqFlow specifications
Information
| Unique identifier | OMICS_01412 |
|---|---|
| Name | RseqFlow |
| Software type | Pipeline/Workflow |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Documentation
- Documentation: https://code.google.com/archive/p/rseqflow/wikis
Maintainers
- person_outline Ying Wang <>
- person_outline Ting Chen <>
- person_outline Ewa Deelman <>
- person_outline James Knowles <>
Publication for RseqFlow
library_books
RseqFlow: workflows for RNA-Seq data analysis.
2011 Bioinformatics
PMCID: 3167055
PMID: 21795323
DOI: 10.1093/bioinformatics/btr441
RseqFlow institution(s)
Department of Biological Sciences, USC, Los Angeles, CA, USA; Department of Automation, Xiamen University, China; USC Information Sciences Institute, Marina del Rey, CA, USA; USC Keck School of Medicine, Department of Psychiatry, Los Angeles, CA, USA
RseqFlow funding source(s)
Supported by the NIH/NIMH 5 RC2 MH090047-01, Transcriptional Atlas of Human Brain Development (TAHBD). Center of Excellence of Genome Sciences: Genomic Analysis of the Genotype-Phenotype Map (NIH/HG 2 P50 HG002790-06).
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