RSF specifications


Unique identifier OMICS_12328
Name RSF
Alternative names RNA Structure Framework, RNA Framework
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data CIRS-seq, DMS-seq, Structure-seq, SHAPE-seq, PARS
Input format FastQ, SAM, BAM
Biological technology Illumina
Operating system Unix/Linux, Mac OS
Programming languages Perl
Parallelization Other
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0.2
First release date 2016
Stability Beta
Requirements SAMtools, BEDtools, ViennaRNA, RNAstructure, Bowtie, CutAdapt
Maintained Yes


  • rf-count
  • rf-index
  • rf-map
  • rf-norm



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Publications for RNA Structure Framework

RSF institution(s)
Human Genetics Foundation (HuGeF), Torino, Italy; Dipartimento di Scienze della Vita e Biologia dei Sistemi, Universita di Torino, Torino, Italy
RSF funding source(s)
Associazione Italiana Ricerca sul Cancro (AIRC)

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