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Number of citations per year for the bioinformatics software tool RSG
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Protocols

RSG specifications

Information


Unique identifier OMICS_27155
Name RSG
Alternative name RefSeqGene
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Additional information


https://www.ncbi.nlm.nih.gov/refseq/rsg/about/

RSG citations

 (16)
library_books

Integrative genomic profiling of large cell neuroendocrine carcinomas reveals distinct subtypes of high grade neuroendocrine lung tumors

2018
Nat Commun
PMCID: 5849599
PMID: 29535388
DOI: 10.1038/s41467-018-03099-x

[…] ants were either extracted from Supplementary Materials or COSMIC v68 (for the TCGA data). Variants were annotated with Annovar (version 12 Nov 2014). Gene strand orientations were retrieved from the RefSeqGene database using a customized Perl script. Variants were included in the analyses only if they could be successfully annotated. Single-base substitutions were classified into 96 types determi […]

library_books

APPRIS 2017: principal isoforms for multiple gene sets

2017
Nucleic Acids Res
PMCID: 5753224
PMID: 29069475
DOI: 10.1093/nar/gkx997

[…] he splice variants that best represent the gene ().Although APPRIS was developed for use with GENCODE/Ensembl annotations (,), there are other manually annotated reference sets, in particular RefSeq (RefSeqGene) () and UniProtKB (). The RefSeq, GENCODE/Ensembl and UniProtKB annotations are not identical and many gene models or predicted proteins are present in one or more reference sets, but not i […]

library_books

Prediction of genome wide DNA methylation in repetitive elements

2017
Nucleic Acids Res
PMCID: 5587781
PMID: 28911103
DOI: 10.1093/nar/gkx587

[…] First, for RE identification and annotation, we used the RepeatMasker () and NCBI RefSeqGene databases () to identify and annotate candidate RE loci for methylation prediction. We obtained the RepeatMasker Library (build hg19) and RefSeqGene annotation database (build hg19) through […]

library_books

Genetic alterations in seborrheic keratoses

2017
Oncotarget
PMCID: 5482683
PMID: 28410231
DOI: 10.18632/oncotarget.16698

[…] /www.ncbi.nlm.nih.gov/SNP/; COSMIC, http://cancer.sanger.ac.uk/cancergenome/projects/cosmic/; Integrative Genomics Viewer (IGV), http://www.broadinstitute.org/igv/; R, http://www.R-project.org/; NCBI RefSeqGene, http://www.ncbi.nlm.nih.gov/refseq/rsg/; Human Splicing Finder - Aix Marseille Université, http://www.umd.be/HSF3/index.html. […]

library_books

Non Homologous End Joining and Homology Directed DNA Repair Frequency of Double Stranded Breaks Introduced by Genome Editing Reagents

2017
PLoS One
PMCID: 5241150
PMID: 28095454
DOI: 10.1371/journal.pone.0169931

[…] The target sequence derived from c-c motif chemokine receptor 5 (CCR5, GenBank RefSeqGene number NG_012637), nt 8761 to nt 8880, encompassing the 3’ end of coding region (exon 3) and the downstream non-coding intron region was used in the ZiFit Targeter online tool (http://zifit […]

library_books

Identification of novel long non coding RNAs deregulated in hepatocellular carcinoma using RNA sequencing

2016
Oncotarget
PMCID: 5077982
PMID: 26887054
DOI: 10.18632/oncotarget.7364

[…] rom The Cancer Genome Atlas for HCC. We analysed 44 cases for which HCC and paired-matched non tumour adjacent tissues were available. The annotated data available from TCGA have a large overlap with RefSeqGene annotation (20,031 genes out of 20,500 included in TCGA gene list, namely 97.7% of the genes). We thus annotated our sequencing data ex-novo using RefSeqGene annotation provided in LifeScop […]


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