rsgcc specifications

Information


Unique identifier OMICS_07364
Name rsgcc
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data A clustered gene expression pattern.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.6
Stability Stable
Requirements
gplots, grDevices, fBasics, bigmemory, snowfall, stringr, gWidgetsRGtk2, R(≥2.15.1), gWidgets, biwt, cairoDevice, minerva, parmigene, ctc
Source code URL https://cran.r-project.org/src/contrib/rsgcc_1.0.6.tar.gz
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Chuang Ma

Publication for rsgcc

rsgcc citation

library_books

Systematically profiling and annotating long intergenic non coding RNAs in human embryonic stem cell

2013
BMC Genomics
PMCID: 3852230
PMID: 24564552
DOI: 10.1186/1471-2164-14-S5-S3

[…] According to previous evaluation [], we calculated the Gini correlation coefficient (GCC) as the co-expression measurement with R package rsgcc. For each lincRNA, protein coding genes with GCC >= 0.9 were taken as the "neighbors" with strong expression correlation. GO enrichment analysis for "neighbors" was implemented by R package GOst […]

rsgcc institution(s)
School of Plant Sciences, University of Arizona, Tucson, AZ, USA

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