RSmatch pipeline

RSmatch specifications

Information


Unique identifier OMICS_15916
Name RSmatch
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA
Operating system Unix/Linux
Computer skills Advanced
Version 1.2
Stability Stable
Maintained No

Versioning


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Maintainer


This tool is not maintained anymore.

Publication for RSmatch

RSmatch IN pipeline

2007
PMCID: 1950533
PMID: 17586815
DOI: 10.1093/nar/gkm474

[…] c-box scoring matrix., rna structures were generated using the rnafold program from the vienna-rna-1.4 package (http://www.tbi.univie.ac.at/~ivo/rna/windoze/), structural alignment was done using rsmatch1.0 converted for windows (original program is available at http://exon.umdnj.edu/software/rsmatch/) and foldalignm (http://foldalign.ku.dk/software/index.html).rrna sequence alignments […]

RSmatch institution(s)
Department of Biochemistry and Molecular Biology, New Jersey Medical School, University of Medicine and Dentistry of New Jersey, Newark, NJ, USA; Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, NJ, USA

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