rSW-seq protocols

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description
rSW-seq computational protocol

rSW-seq specifications

Information


Unique identifier OMICS_00351
Name rSW-seq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Peter J. Park <>

Publication for rSW-seq

rSW-seq IN pipeline

2012
PMCID: 3446302
PMID: 22531030
DOI: 10.1186/gb-2012-13-4-r28

[…] htseq union mode [60], and used the unique mapping reads to calculate reads per kb per million mapped (rpkm) as the normalized metric of gene expression. we identified the novel df breakpoint with rsw-seq [61] and determined fold-difference for aneuploid segments with samtools [62], which we expressed as reads per million (rpm). all but the smallest 5 kb deletion was detected using […]

rSW-seq institution(s)
Center for Biomedical Informatics, Harvard Medical School, MA, USA

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