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RTG Metagenomics

Delivers comprehensive results on the composition of microbial communities and their associated metabolic pathways, genes and genomes. Real Time Genomics’ metagenomic pipeline was developed to estimate the abundance or frequency of a particular genome (typically a bacterial species) in a complex metagenomic sample. The calculations are performed on standard SAM files after reads have been mapped to a reference genome set containing thousands of genomes, many of which are highly related at the nucleotide level.

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RTG Metagenomics forum

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RTG Metagenomics classification

RTG Metagenomics specifications

Unique identifier:
OMICS_01522
Interface:
Graphical user interface
Input data:
FASTA and FASTQ sequence data files are accepted as input for read mapping, filtering, translated nucleotide search, and kmer- based sample comparisons. SAM or BAM alignment data files are taken as inputs for species abundance and coverage analytics.
Biological technology:
Illumina, Life Technologies, Roche
Programming languages:
Java
Computer skills:
Medium
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
Academic or non-commercial use
Input format:
FASTA, FASTQ, SAM, BAM
Operating system:
Unix/Linux, Mac OS, Windows
License:
Commercial
Version:
1.0
Maintained:
Yes

RTG Metagenomics distribution

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RTG Metagenomics support

Maintainer

  • RTG Variant <>

Credits

Institution(s)

Real Time Genomics, CA, USA

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