rtracklayer pipeline

rtracklayer specifications

Information


Unique identifier OMICS_09883
Name rtracklayer
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Medium
Version 1.28.10
Stability Stable
Requirements methods, GenomicRanges
Maintained Yes

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Documentation


Maintainer


  • person_outline Michael Lawrence <>

Publication for rtracklayer

rtracklayer citations

 (2)
2018
PMCID: 5850119

[…] to genome reference grch37, so we will have to uplift them to grch38 using rtracklayer 50 and a mapping ("chain") file. the r.utils package is only required to extract the gzipped file:, library(rtracklayer) library(r.utils) # uncomment the following line to download file #download.file("http://hgdownload.cse.ucsc.edu/goldenpath/hg19/liftover/hg19to hg38.over.chain.gz", destfile = […]

2012
PMCID: 3401476

[…] was then applied to find potential mirnas in the data set based on the suggested parameters. results were compared to data assembled in the differential expression analysis by using the package rtracklayer (34) of the bioconductor project., total rna was isolated from mouse es cells, primary hippocampal neurons and primary astrocytes with tri reagent (sigma-aldrich, vienna, austria) […]

rtracklayer institution(s)
Program in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA; Channing Laboratory, Harvard Medical School, Boston, MA, USA
rtracklayer funding source(s)
NHGRI (grant P41HG004059 to R.G., in part)

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