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Facilitates the primary and secondary analysis of re-sequencing projects by providing an integrated software suite of parallelized pipelines to detect exome variants (single-nucleotide variants and copy number variations) and to perform bisulfite-seq analyses automatically. RUbioSeq’s variant analysis results have been already validated and published.

Software type:
Pipeline
Interface:
Command line interface, Graphical user interface
Restrictions to use:
None
Input format:
FASTQ, CSFASTA, QUAL, BAM
Output data:
SAM/BAM, bed, wig, VCF
Biological technology:
Illumina, Life Technologies
Operating system:
Unix/Linux
Programming languages:
Perl
License:
CC Attribution
Computer skills:
Advanced
Stability:
Stable
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Maintainer

  • Miriam Rubio-Camarillo <mrubioc at cnio.es>

Institution(s)

Structural Computational Biology Group, Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), 28029 Madrid, Spain; Bioinformatics Unit (UBio), Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), 28029 Madrid, Spain; Spanish National Bioinformatics Institute (INB), INB Node 2, Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), 28029 Madrid, Spain

  • (Rubio-Camarillo et al., 2013) RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses. Bioinformatics.
    PMID: 23630175

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