RUVSeq specifications

Information


Unique identifier OMICS_05652
Name RUVSeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.13
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Sandrine Dudoit <>

RUVSeq article

RUVSeq citation

2017
PMCID: 5457141

[…] al., 2014) using the uniq-counting mode., differential expression analysis was performed by deseq2 (love et al., 2014). batch effects from library preparation and sequencing were removed using the ruv r package (risso et al., 2014). pathway and functional analysis of gene lists were performed using the go-elite (zambon et al., 2012)., to examine gene expression in arg in human and mouse […]

RUVSeq institution(s)
Department of Statistics, University of California, Berkeley, Berkeley, CA, USA; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA; Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, USA; Functional Genomics Laboratory, University of California, Berkeley, Berkeley, CA, USA; Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia; Department of Mathematics and Statistics, The University of Melbourne, Victoria, Australia; Department of Statistics, University of California, Berkeley, Berkeley, CA, USA; Division of Biostatistics, University of California, Berkeley, Berkeley, CA, USA
RUVSeq funding source(s)
Supported by a grant from the National Institute on Deafness and Other Communication Disorders. T.P.S. was supported by an NHMRC Australia Fellowship.

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