RVboost specifications

Unique identifier:
OMICS_05424
Interface:
Command line interface
Input data:
Aligned RNA
Output data:
Variants with full annotations, Qscore, OrgScore
Biological technology:
Illumina
Programming languages:
Perl, R, Shell (Bash)
Version:
0.1
Requirements:
Virtual Box, Java, gcc, g++
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
BAM
Output format:
VCF, TRAIN, PNG
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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RVboost distribution

download

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Publications

Institution(s)

Division of Biomedical Statistics and Informatics, Mayo Clinic, Chinahester, MN, USA; Department of Health Sciences Research, Mayo Clinic, Jacksonville, FL, USA; Department of Laboratory Medicine and Pathology, Mayo Clinic, Chinahester, MN, USA; Division of Hematology, Department of Internal Medicine, Mayo Clinic, Chinahester, MN, USA; Division of Epidemiology, Department of Health Sciences Research, Mayo Clinic, Chinahester MN, USA; Department of Cancer Biology, Mayo Clinic, Jacksonville FL, USA

Funding source(s)

This work was funded by the Center for Individualized Medicine at Mayo Clinic Jacksonville Florida, Donna Foundation, National Marathon to Fight Breast Cancer and NIH P50 CA097274.

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