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S2C specifications

Information


Unique identifier OMICS_26497
Name S2C
Alternative name Seq2Coord
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained No

Maintainer


This tool is not maintained anymore.

S2C citations

 (209)
library_books

MutationalPatterns: comprehensive genome wide analysis of mutational processes

2018
Genome Med
PMCID: 5922316
PMID: 29695279
DOI: 10.1186/s13073-018-0539-0

[…] d deconstructSigs (mean α = 0.977, mean RSS = 1.40e-03). Importantly, the MutationalPatterns analysis runtime is approximately 400 times faster compared with deconstructSigs (Additional file : Figure S2C). […]

library_books

Quantitative proteomic analysis of pancreatic cyst fluid proteins associated with malignancy in intraductal papillary mucinous neoplasms

2018
PMCID: 5907296
PMID: 29713252
DOI: 10.1186/s12014-018-9193-1

[…] eome Database to assess the likelihood that the discovered proteins are potential blood markers [, ]. As a result, 2299 (79.7%) of the identified proteins were plasma proteins (Additional file : Fig. S2c, Additional file : Table S1). To determine whether the discovered proteins are expressed in the pancreas, the dataset was crossreferenced with The Human Protein Atlas (http://www.proteinatlas.org, […]

library_books

A comparison of methods used to unveil the genetic and metabolic pool in the built environment

2018
Microbiome
PMCID: 5902888
PMID: 29661230
DOI: 10.1186/s40168-018-0453-0

[…] ure S2a and b). Despite the variation in the taxa involved in the respective association networks, network structural properties, as portrayed by network degree distribution (Additional file : Figure S2c) and natural connectivity in response to random (Additional file : Figure S2d) or non-random node removal (Additional file : Figure S2e and f) appear to be similar between the networks. While stru […]

library_books

The plant hormone ethylene restricts Arabidopsis growth via the epidermis

2018
Proc Natl Acad Sci U S A
PMCID: 5924893
PMID: 29643073
DOI: 10.1073/pnas.1717649115

[…] cker tool () designed to be used with the ImageJ platform. The rosette area and phenotype of ctr1-1 transgenic lines carrying pLRC1::EBF2, pML1::EBF2, or pA14::EBF2 constructs ( and SI Appendix, Fig. S2C) were calculated on day 21 after germination of plants grown on soil (at least 19 individuals from each line were analyzed). Initially the seedlings from the different lines were grown simultaneou […]

library_books

BRD7 expression and c Myc activation forms a double negative feedback loop that controls the cell proliferation and tumor growth of nasopharyngeal carcinoma by targeting oncogenic miR 141

2018
PMCID: 5859396
PMID: 29559001
DOI: 10.1186/s13046-018-0734-2

[…] ssion of miR-141 (Fig. and Additional file : Figure S 2b). Additionally, we examined that ectopic expression of BRD7 did not affect the expression of c-Myc protein and mRNA (Additional file : Figure S2c and d). Importantly, we have previously performed an integrative analysis of genome-wide chromatin occupancy of BRD7 by ChIP-sequencing [] and noted that there were 8 binding peaks of BRD7 on chro […]

library_books

Genetic Evidence for Early Peritoneal Spreading in Pelvic High Grade Serous Cancer

2018
PMCID: 5858520
PMID: 29594039
DOI: 10.3389/fonc.2018.00058

[…] Because MuTect2 uses joint calling of variants from tumor RNA and normal DNA, the germline filter has no additional effect on consensus variant calls (hereafter referred to as Tier 1 variants, Figure S2C in Supplementary Material). To obtain variants with a higher degree of confidence, we further filtered out variants called at positions with coverage <5× in normal DNA and <10× coverage in tumor R […]

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S2C institution(s)
Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia, PA, USA

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