SABmark pipeline

SABmark specifications


Unique identifier OMICS_00988
Name SABmark
Alternative name Sequence and structure Alignment Benchmark
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for Sequence and structure Alignment Benchmark

SABmark IN pipeline

PMCID: 2823711
PMID: 20102627
DOI: 10.1186/1471-2105-11-54

[…] widely used benchmarking approaches for alignment tools are (i) to make use of biological sequences and their manually curated alignments from databases such as homstrad [15], balibase [16], and sabmark [17], or (ii) to simulate the evolution of biological sequences by using specialized tools such as dawg [18], rose [19] and indelible [20]. the main advantage of the former approach […]

SABmark institution(s)
Department of Ultrastructure, Vrije Universiteit Brussel, Pleinlaan, Brussel, Belgium

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