SAD specifications


Unique identifier OMICS_26814
Name SAD
Alternative name Structural Alignment Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained No


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Publication for Structural Alignment Database

SAD citations


Computational approaches for de novo design and redesign of metal binding sites on proteins

Biosci Rep
PMCID: 5482196
PMID: 28167677
DOI: 10.1042/BSR20160179

[…] re. Use of ab initio methods as in IonCom [] server has also been recently realized. Several helper tools such as MetalS2 [], MetalS3 [], FindGeo [], CheckMyMetal (CMM) [] were developed for pairwise structural alignment, database mining of metal-binding sites, determination of metal co-ordination geometry, validation of metal-binding sites in PDB structures respectively. Software developed for th […]


Analysis of the Mitochondrial Genome in Hypomyces aurantius Reveals a Novel Twintron Complex in Fungi

Int J Mol Sci
PMCID: 4964425
PMID: 27376282
DOI: 10.3390/ijms17071049

[…] cox3) were predicted using the program INFERNAL [] by aligning with published group I introns [,,,]. Structure alignment data for most existing group I introns was available in GISSD (Group I intron structural alignment database) []. Key stem-loop structure elements were identified using the online program Mfold [], and final secondary structures were drawn using CorelDraw™ software. […]

SAD institution(s)
The Scripps Research Institute, La Jolla, CA, USA
SAD funding source(s)
Supported by a Wellcome Trust Prize Traveling Research Fellowship.

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