Sailfish specifications

Unique identifier:
OMICS_03939
Interface:
Command line interface
Input data:
A set of transcript and a set of reads.
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 3.0
Version:
0.10.0
Requirements:
C++11 conformant compiler, CMake
Software type:
Application/Script
Restrictions to use:
None
Input format:
FASTA+FASTA,FASTQ
Programming languages:
C, C++
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

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Sailfish distribution

download

Sailfish support

Documentation

Maintainer

  • Carl Kingsford <>

Additional information

http://sailfish.readthedocs.io/en/master/

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Credits

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Publications

Institution(s)

Lane Center for Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, USA; Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA

Funding source(s)

Supported by National Science Foundation (CCF-1256087, CCF-1053918, and EF-0849899) and National Institutes of Health (1R21AI085376, 1R21HG006913, and R01HG007104).

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