SAINT specifications


Unique identifier OMICS_16243
Alternative name Significance Analysis of INTeractome
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Bait file, prey file, interaction file and interaction database file
Output data Output file with 16 columns (Bait, Prey, PreyGene, Spec, SpecSum, AvgSpec, NumReplicate, ctrlCounts, AvgP, MaxP, TopoAvgP, TopoMaxP, SaintScore, FoldChange, Boosted_by, FDR)
Operating system Windows
Programming languages C
Computer skills Advanced
Version 2.0
Stability Stable
Requirements G++
Maintained Yes



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  • person_outline Alexey Nesvizhskii <>

Publication for Significance Analysis of INTeractome

SAINT funding source(s)
This work was supported by the Canadian Institute of Health Research (grants n°MOP84314 and MOP12246), the US National Institutes of Health (grants n°5R01RR024031, R01GM094231 and R01 CA126239), a Royal Society Wolfson Research Merit Award and a Scottish Universities Life Sciences Alliance Research Chair, a Canada Research Chair in Functional Proteomics and the Lea Reichmann Chair in Cancer Proteomics.

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