SAINT2 pipeline

SAINT2 specifications

Information


Unique identifier OMICS_23775
Name SAINT2
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A target sequence, a fragment library and a contact.
Input format FASTA+FLIB+CON
Output data Some structure predictions.
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Saulo H. P. de Oliveira <>

Publication for SAINT2

SAINT2 IN pipelines

 (2)
2016
PMCID: 5860252
PMID: 28171606
DOI: 10.1093/bioinformatics/btw618

[…] the proportion of satisfied predicted contacts can be used to discriminate between correct (tm-score > 0.5) and incorrect models. for this analysis, we used the 10 000 decoys generated using saint2 and metapsicov stage 1 for each of the 41 protein in our pdb-representative dataset. we have considered the proportions of satisfied long-range, short-range and all-range contacts. our results […]

2014
PMCID: 4204877
PMID: 25251148
DOI: 10.1021/bi500676p

[…] complex, anomalous data were collected on a bruker x8 prospector (bruker corporation, billerica, ma) with cu kα radiation (1.5418 å) at 100 k using an oxford cryosystem. data were integrated using saint23 and scaled with sadabs.23 xprep23 was used to determine the space group and to analyze the data. the apo-ape1 data were also collected on our home source instrument and processed as described […]

SAINT2 institution(s)
Department of Statiscts, University of Oxford, Oxford, UK; Department of Informatics, UCB Pharma, Slough, UK; Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, China
SAINT2 funding source(s)
Supported by Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPQ) - Ciencia Sem Fronteiras - Grant Number: 237656/2012-4; Engineering and Physical Sciences Research Council grant to System Approaches to Biomedical SciencesCentre for Doctoral Training - Grant Number: EP/G037280/1.

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