Protocols

SALAD specifications

Information


Unique identifier OMICS_21200
Name SALAD
Alternative name Surveyed conserved motif ALignment diagram and the Associating Dendrogram
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 1.0
Maintained Yes

Maintainer


  • person_outline Takeshi Izawa

Publication for Surveyed conserved motif ALignment diagram and the Associating Dendrogram

SALAD citations

 (2)
call_split

Comparative analysis of the RTFL peptide family on the control of plant organogenesis

2015
J Plant Res
PMCID: 4408365
PMID: 25701405
DOI: 10.1007/s10265-015-0703-1
call_split See protocol

[…] mbers, HMMER was used to search the Pfam database and BLASTP was used to search SALAD, Pytozome v8.0, NCBI, and Sol genomics network (TableĀ ). Whole-sequence comparison of RTFLs was obtained from the Surveyed Conserved Motif Alignment Diagram and the Associating Dendrogram (SALAD) database (Mihara et al. ). SALAD is commonly used for genome-wide comparative analysis of annotated protein sequences […]

library_books

Duplication of a well conserved homeodomain leucine zipper transcription factor gene in barley generates a copy with more specific functions

2009
PMCID: 2834773
PMID: 19707806
DOI: 10.1007/s10142-009-0134-y

[…] ing method, using PAUP 4.0b10 software (Sinauer, Sunderland, Massachusetts) employing 100 bootstrap replicates. Insertion/deletion characters were not included. Peptide motifs were analyzed using the Surveyed conserved motif ALignment diagram and the Associating Dendrogram (SALAD) database (http://salad.dna.affrc.go.jp/salad/en/; Mihara et al. ). A graphical display of motif composition was constr […]

SALAD institution(s)
Plant Genomics Research Unit, National Institute of Agrobiological Sciences, Tsukuba, Japan; Bioinformatics Research Unit, National Institute of Agrobiological Sciences, Tsukuba, Japan
SALAD funding source(s)
Supported by Ministry of Agriculture, Forestry and Fisheries of Japan (Agrobiological Genomics, GD1003; Genomics for Agricultural Innovation, GIR1002, RTR0004, and GIR1001).

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