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SALAMI specifications

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Unique identifier OMICS_14539
Name SALAMI
Interface Web user interface
Restrictions to use None
Input data Structure upload, PDB ID, chain, List of PDB IDs
Input format PDB
Computer skills Basic
Stability No
Maintained No

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Publication for SALAMI

SALAMI citations

 (2)
library_books

Structural aspects of nucleotide ligand binding by a bacterial 2H phosphoesterase

2017
PLoS One
PMCID: 5283653
PMID: 28141848
DOI: 10.1371/journal.pone.0170355

[…] swiss pdb viewer [] and espript []. for structure analyses, pymol and ucsf chimera [] were used. superpositions were done with the ssm algorithm [], and structural homologues were searched using salami []. modeling of the substrate complex and a complex with a 3-base rna oligonucleotide was done in yasara []. electrostatic surfaces were calculated using pdb2pqr and abps []., the complex […]

library_books

d(GGGT)4 and r(GGGU)4 are both HIV 1 inhibitors and interleukin 6 receptor aptamers

2013
RNA Biol
PMCID: 3594281
PMID: 23235494
DOI: 10.4161/rna.22951

[…] aptamers to the different proteins, the structures of il-6r and hiv-1 were compared using three programs that detect similarities at the structural level, even without sequence similarity. neither salami, dali nor fatcat reported any significant structural similarity., aid-1 or t30923 and t30175 are well established hiv infection inhibitors., for this reason we analyzed aid-1, t30175 […]


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SALAMI institution(s)
Centre for Bioinformatics, University of Hamburg, Hamburg, Germany

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