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SALAMI specifications


Unique identifier OMICS_14539
Interface Web user interface
Restrictions to use None
Input data Structure upload, PDB ID, chain, List of PDB IDs
Input format PDB
Computer skills Basic
Stability No
Maintained No


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SALAMI citations


Structural aspects of nucleotide ligand binding by a bacterial 2H phosphoesterase

PLoS One
PMCID: 5283653
PMID: 28141848
DOI: 10.1371/journal.pone.0170355

[…] swiss pdb viewer [] and espript []. for structure analyses, pymol and ucsf chimera [] were used. superpositions were done with the ssm algorithm [], and structural homologues were searched using salami []. modeling of the substrate complex and a complex with a 3-base rna oligonucleotide was done in yasara []. electrostatic surfaces were calculated using pdb2pqr and abps []., the complex […]


d(GGGT)4 and r(GGGU)4 are both HIV 1 inhibitors and interleukin 6 receptor aptamers

RNA Biol
PMCID: 3594281
PMID: 23235494
DOI: 10.4161/rna.22951

[…] aptamers to the different proteins, the structures of il-6r and hiv-1 were compared using three programs that detect similarities at the structural level, even without sequence similarity. neither salami, dali nor fatcat reported any significant structural similarity., aid-1 or t30923 and t30175 are well established hiv infection inhibitors., for this reason we analyzed aid-1, t30175 […]

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SALAMI institution(s)
Centre for Bioinformatics, University of Hamburg, Hamburg, Germany

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