Salmon specifications


Unique identifier OMICS_09075
Name Salmon
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An index of the transcriptome and a set of raw sequencing reads.
Input format FASTA
Operating system Unix/Linux
Programming languages C, C++, Python, Shell (Bash)
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 0.12.0-alpha
Stability Alpha
Maintained Yes


  • Alevin



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  • person_outline Rob Patro <>

Additional information

Publications for Salmon

Salmon institution(s)
Department of Computer Science, Stony Brook University, New York, USA; Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, UK; Sheffield Institute for Nucleic Acids, Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, UK
Salmon funding source(s)
Supported by the National Science Foundation under Grant Numbers EF-0849899, IIS-0812111, CCF-1053918.

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