A multiorganism database containing EST sequences from Salmo salar, Oncorhynchus mykiss and the whole genome sequence of Danio rerio, Gasterosteus aculeatus, Tetraodon nigroviridis, Oryzias latipes and Takifugu rubripes, built with core components from GMOD project, GOPArc system and the BioMart project. These tools make SalmonDB database a valuable resource for researchers searching for transcripts and genomic information regarding Salmo salar and other salmonid species.
Laboratory of Bioinformatics and Mathematics of the Genome, Center for Mathematical Modeling (UMI 2807 CNRS) and Center for Genome Regulation, University of Chile, Santiago, Chile; Department of Mathematical Engineering, Faculty of Physical and Mathematical Sciences, University of Chile, Santiago, Chile; ICBM Human Genetics Program, Faculty of Medicine, University of Chile, Santiago, Chile; Laboratorio de Bioinformatica y Expresion Génica, INTA, University of Chile, Santiago, Chile
SalmonDB funding source(s)
The work was supported by CORFO-INNOVA (grant 07CN13PBT-41); Fondecyt (1110427) and Fondap (No 15090007); Basal Grant CMM Projects.