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- person_outline Andrés Aravena
Publication for SalmonDB
The developmental transcriptome of contrasting Arctic charr ( Salvelinus alpinus) morphs
[…] f the 36 bp reads yielded an excessive number of short contigs we chose to assess expression and genetic variation by mapping the reads to 59336 S. salar expressed sequence tag (EST) contigs from the SalmonDB [ , downloaded 22. March 2012] and the Arctic charr mitochondrial genome [ , NC_000861].To estimate expression, reads were aligned with RSEM version 1.1.18 with default parameters. RSEM distr […]
Differential expression of the aryl hydrocarbon receptor pathway associates with craniofacial polymorphism in sympatric Arctic charr
[…] ow. To identify the conserved exon/intron boundaries of the candidate genes, the assembled charr contigs were aligned to the genomic sequences of salmon orthologs (retrieved from the salmon database, SalmonDB ) using the NCBI Spidey software (http://www.ncbi.nlm.nih.gov/spidey). Primers were designed using Primer Express 3.0 software (Applied Biosystems, Foster City, CA, USA) and checked for sel […]
Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr
[…] nd aligned charr contigs to the genomic sequences of zebrafish and salmon orthologs from the Ensembl database (http://useast.ensembl.org/Danio_rerio/Info/Index) and salmonids species database (http://salmondb.cmm.uchile.cl/) using the National Center for Biotechnology Information Spidey software (http://www.ncbi.nlm.nih.gov/spidey). Primers were designed using Primer Express 3.0 software (Applied […]
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