SAMBLASTER pipeline

SAMBLASTER specifications

Information


Unique identifier OMICS_04682
Name SAMBLASTER
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format SAM
Output data The discordant read-pairs and/or split-read mappings used for structural variant calling.
Operating system Unix/Linux, Mac OS
Programming languages C++
License MIT License
Computer skills Advanced
Version 0.1.24
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Documentation


Publication for SAMBLASTER

SAMBLASTER citation

2018
PMCID: 5880256

[…] (version 2.2.5) (langmead and salzberg 2012) and converted to bam format using samtools (version 0.1.19) (li et al. 2009). duplicate reads were marked and removed from the resulting bam files using samblaster (version 0.1.21) (faust and hall 2014)., aligned reads were counted in 1000-bp windows across the entire genome using bedtools-2.25.0 (quinlan and hall 2010). coverage log ratios […]

SAMBLASTER institution(s)
Department of Biochemistry and Molecular Genetics and Center for Public Health Genomics, University of Virginia, Charlottesville, VA, USA
SAMBLASTER funding source(s)
Supported by NIH New Innovator Award (DP2OD006493-01) and a Burroughs Wellcome Fund Career Award.

SAMBLASTER reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SAMBLASTER