Samifier specifications

Information


Unique identifier OMICS_24434
Name Samifier
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A genomic sequence, the genome coordinates for all genes, the results from the MS/MS ions search results and an accession number mapping file.
Input format FASTA+GFF3+DAT
Output format SAM+BED
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.9+
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Marc Wilkins <>

Publication for Samifier

Samifier institution(s)
Systems Biology Initiative, The University of New South Wales, Sydney, NSW, Australia; School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, NSW, Australia; Intersect Australia Limited, Sydney, NSW, Australia; Endocrine Research Laboratory (KMEB), Department of Endocrinology and Metabolism, Odense University Hospital & University of Southern Denmark, Odense, Denmark
Samifier funding source(s)
Supported by the Australian National Data Service (ANDS), the New South Wales State Government Science Leveraging Fund, the EIF Super Science scheme, the University of New South Wales and the Australian Research Council.

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