sampleSNPs statistics

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Associated diseases

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sampleSNPs specifications

Information


Unique identifier OMICS_24100
Name sampleSNPs
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input format BED
Operating system Unix/Linux, Mac OS
Programming languages C++
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Anthony Greenberg <>

Additional information


https://tonymugen.github.io/sampleSNPs

Publication for sampleSNPs

sampleSNPs in publications

 (2)
PMCID: 5892033
PMID: 29636098
DOI: 10.1186/s13059-018-1427-z

[…] powerful r/bioconductor packages easily accessible by wrapping them under a graphical interface. anthony greenberg (bayesic research, ithaca, usa) has developed memory-efficient sampling software, samplesnps, to generate representative samples from large dna sequence variation data sets. this software can be very useful when a quick test is needed on computationally intensive pipelines. fábio […]

PMCID: 5940139
PMID: 29531124
DOI: 10.1534/g3.117.300465

[…] counter. the decision is made automatically at run time and does not involve user input., this report describes three pieces of software: a c++ library libsampfiles and two stand-alone programs: samplesnps produces ordered samples from variant files and sampleld uses locus samples to calculate distributions of linkage disequilibrium statistics. all software is released under the bsd […]


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sampleSNPs institution(s)
Bayesic Research, Ithaca, NY, USA

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