SAMSA specifications


Unique identifier OMICS_11426
Alternative names Simple Analysis of Metatranscriptome Sequence Annotations, SAMSA2
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2.0
Stability Stable
Requirements SAMSA, FLASH, Trimmomatic, Python, R
Maintained Yes


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  • person_outline Samuel Westreich <>
  • person_outline Danielle Lemay <>
  • person_outline Michelle Treiber <>
  • person_outline Davis Mills <>
  • person_outline Ian Korf <>

Publications for Simple Analysis of Metatranscriptome Sequence Annotations

SAMSA institution(s)
Genome Center, University of California, Davis, California, USA; Department of Food Science and Technology, University of California, Davis, California, USA; USDA ARS Western Human Nutrition Research Center, Davis, CA, USA
SAMSA funding source(s)
Partially supported by an industry/campus supported fellowship of STW under the Training Program in Biomolecular Technology (T32-GM008799) at the University of California, Davis; a Signature Research in Genomics Award, by the Peter J. Shields Endowed Chair in Dairy Food Science, and by NIH R01A T008759; the U.S. Department of Agriculture project 2032-53000-001-00-D.

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