SAMtools tview protocols

SAMtools tview specifications

Information


Unique identifier OMICS_00893
Name SAMtools tview
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

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Publication for SAMtools tview

SAMtools tview IN pipeline

2014
PMCID: 4170574
PMID: 25230663
DOI: 10.1038/nature13673

[…] (gq) of ≥30, and snp quality (qual) of ≥50. for motala12, which is of lower coverage, we included sites having at least 2× coverage and that passed visual inspection of the local alignment using samtools tview (http://samtools.sourceforge.net)60, the human origins array consists of 14 panels of snps for which the ascertainment is well known8,61. all population genetics analysis were carried […]

SAMtools tview institution(s)
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, UK; Broad Institute of MIT and Harvard, Cambridge, MA, USA; Beijing Institute of Genomics, Chinese Academy of Science, Beijing, China; Department of Computer Science, University of California Los Angeles, Los Angeles, CA, USA; Department of Biology, Boston College, Chestnut Hill, MA; Center for Statistical Genetics, Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA

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